PRKACA

PRKACA
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2GU8, 3AGL, 3AGM, 3AMA, 3AMB, 3L9L, 3L9M, 3L9N, 3MVJ, 3NX8, 3OOG, 3OVV, 3OWP, 3OXT, 3P0M, 3POO, 3VQH, 4AE6, 4AE9, 4WB5, 4WB6, 4WB7, 4WB8, 5IZJ, 4UJB, 4UJA, 4UJ2, 4UJ1, 4UJ9
Identifiers
Aliases	PRKACA, PKACA, PPNAD4, protein kinase cAMP-activated catalytic subunit alpha, CAFD1
External IDs	OMIM: 601639; MGI: 97592; HomoloGene: 121574; GeneCards: PRKACA; OMA:PRKACA - orthologs
Gene location (Human) Chr. Chromosome 19 (human)[1] Band 19p13.12 Start 14,091,688 bp[1] End 14,118,084 bp[1]
Gene location (Mouse) Chr. Chromosome 8 (mouse)[2] Band 8|8 C2 Start 84,699,622 bp[2] End 84,723,072 bp[2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in gastrocnemius muscle left ventricle skeletal muscle tissue left adrenal gland smooth muscle tissue ovary monocyte superior frontal gyrus prefrontal cortex anterior pituitary Top expressed in dorsomedial hypothalamic nucleus entorhinal cortex superior frontal gyrus brown adipose tissue medulla oblongata cerebellar cortex medial vestibular nucleus inferior colliculus right ventricle superior colliculus More reference expression data BioGPS n/a
Gene ontology Molecular function kinase activity ATP binding protein kinase activity transferase activity protein binding protein serine/threonine/tyrosine kinase activity protein kinase binding nucleotide binding ubiquitin protein ligase binding cAMP-dependent protein kinase activity magnesium ion binding protein serine/threonine kinase activity protein domain specific binding manganese ion binding protein kinase A regulatory subunit binding Cellular component calcium channel complex membrane mitochondrion nucleus centrosome cell projection nuclear speck cilium motile cilium extracellular exosome plasma membrane nucleoplasm nucleotide-activated protein kinase complex sperm midpiece plasma membrane raft acrosomal vesicle cytoplasm cytosol cytoplasmic vesicle intercellular bridge perinuclear region of cytoplasm neuromuscular junction sperm flagellum dendritic spine ciliary base cAMP-dependent protein kinase complex axoneme Biological process activation of protein kinase A activity regulation of bicellular tight junction assembly cellular response to epinephrine stimulus protein phosphorylation regulation of osteoblast differentiation G2/M transition of mitotic cell cycle cellular response to glucose stimulus regulation of cytosolic calcium ion concentration stimulatory C-type lectin receptor signaling pathway phosphorylation regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion cellular response to glucagon stimulus mRNA processing regulation of heart rate calcium-mediated signaling using intracellular calcium source regulation of proteasomal protein catabolic process regulation of ryanodine-sensitive calcium-release channel activity regulation of cardiac conduction cell communication by electrical coupling involved in cardiac conduction blood coagulation renal water homeostasis regulation of cardiac muscle contraction regulation of protein binding regulation of macroautophagy cellular response to heat ciliary basal body-plasma membrane docking mesoderm formation neural tube closure peptidyl-threonine phosphorylation protein autophosphorylation positive regulation of protein export from nucleus sperm capacitation modulation of chemical synaptic transmission regulation of protein processing cellular response to parathyroid hormone stimulus negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning peptidyl-serine phosphorylation high-density lipoprotein particle assembly regulation of G2/M transition of mitotic cell cycle protein kinase A signaling cytokine-mediated signaling pathway Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 5566 18747 Ensembl ENSG00000072062 ENSG00000288516 ENSMUSG00000005469 UniProt P17612 P05132 RefSeq (mRNA) NM_207518 NM_001304349 NM_002730 NM_001277898 NM_008854 RefSeq (protein) NP_001291278 NP_002721 NP_997401 NP_001264827 NP_032880 Location (UCSC) Chr 19: 14.09 – 14.12 Mb Chr 8: 84.7 – 84.72 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

The catalytic subunit α of protein kinase A is a key regulatory enzyme that in humans is encoded by the PRKACA gene.^[5] This enzyme is responsible for phosphorylating other proteins and substrates, changing their activity. Protein kinase A catalytic subunit (PKA Cα) is a member of the AGC kinase family (protein kinases A, G, and C), and contributes to the control of cellular processes that include glucose metabolism, cell division, and contextual memory.^[6][7][8] PKA Cα is part of a larger protein complex that is responsible for controlling when and where proteins are phosphorylated. Defective regulation of PKA holoenzyme activity has been linked to the progression of cardiovascular disease, certain endocrine disorders and cancers.

Discovery

Edmond H. Fischer and Edwin G. Krebs at the University of Washington discovered PKA in the late 1950s while working through the mechanisms that govern glycogen phosphorylase. They realized that a key metabolic enzyme called phosphorylase kinase was activated by another kinase that was dependent on the second messenger cyclic AMP (cAMP).^[9] They named this new enzyme the cAMP-dependent protein kinase, and proceeded to purify and characterize this new enzyme. Fischer and Krebs won the Nobel Prize in Physiology or Medicine in 1992 for this discovery and their continued work on kinases, and their counterparts the protein phosphatases. Today, this cAMP-dependent protein kinase is more simply noted as PKA.

Another key event in the history of PKA occurred when Susan Taylor and Janusz Sowadski at the University of California San Diego solved the three dimensional structure of the catalytic subunit of the enzyme.^[10] It was also realized that inside cells, PKA catalytic subunits are found in complex with regulatory subunits and inhibitor proteins that block the activity of the enzyme. An additional facet of PKA action that was pioneered by John Scott at the University of Washington and Kjetil Tasken at the University of Oslo is that the enzyme is tethered within the cell through its association with a family of A-kinase-anchoring proteins (AKAPs). This led to the hypothesis that the subcellular localization of anchored PKA controls what proteins are regulated by the kinase.^[11]

Catalytic subunits

PRKACA is found on chromosome 19 in humans.^[5] There are two well-described transcripts of this gene, arising from alternative splicing events. The most common form, called Cα1, is expressed throughout human tissue. Another transcript, called Cα2, is found primarily in sperm cells and differs from Cα1 only in the first 15 amino acids.^[12]

In addition, there are two other isoforms of the catalytic subunit of PKA called Cβ and Cγ arising from different genes but have similar functions as Cα.^[13][14] Cβ is found abundantly in the brain and in lower levels in other tissues, while Cγ is most likely expressed in the testis.

Signaling

Inactive PKA holoenzyme exists as a tetramer composed of two regulatory (R) subunits and two catalytic (C) subunits.^[15] Biochemical studies demonstrated that there are two types of R subunits. The type I R subunits of which there are two isoforms (RIα, and RIβ) bind the catalytic subunits to create the type I PKA holoenzyme. Likewise type II R subunits, of which there are two isoforms (RIIα, and RIIβ), create the type II PKA holoenzyme. In the presence of cAMP, each R subunit binds 2 cAMP molecules and causes a conformational change in the R subunits that releases the C subunits to phosphorylate downstream substrates.^[16] The different R subunits differ in their sensitivity to cAMP, expression levels and subcellular locations. A-kinase-anchoring proteins (AKAPs) bind a surface formed between both R subunits and target the kinase to different locations in the cell. This optimizes where and when cellular communication occurs within the cell.^[11]

Clinical significance

Protein kinase A has been implicated in a number of diseases, including cardiovascular disease, tumors of the adrenal cortex, and cancer. It has been speculated that abnormally high levels of PKA phosphorylation contributes to heart disease. This affects excitation-contraction coupling, which is a rhythmic process that controls the contraction of cardiac muscle through the synchronized actions of calcium and cAMP responsive enzymes.^[17] There is also evidence to support that the mis-localization of PKA signaling contributes to cardiac arrhythmias, specifically Long QT syndrome. This results in irregular heartbeats that can cause sudden death.

Mutations in the PRKACA gene that promote abnormal enzyme activity have been linked to disease of the adrenal gland. Several mutations in PRKACA have been found in patients with Cushing's syndrome that result in an increase in the ability of PKA to broadly phosphorylate other proteins. One mutation in the PRKACA gene that causes an amino acid substitution of leucine to arginine in position 206, was found in over 60% of patients with adrenocortical tumors.^[18] Other mutations and genetic alterations in the PRKACA gene have been identified in adrenocortical adenomas that also disrupt PKA signaling, leading to aberrant PKA phosphorylation. The Cα gene has also been incriminated in a variety of cancers, including colon, renal, rectal, prostate, lung, breast, adrenal carcinomas and lymphomas.

There is recent and growing interest in fibrolamellar hepatocellular carcinoma. The molecular basis for this rare form of liver cancer that afflicts young adults is a genetic deletion on chromosome 19. The loss of DNA has been found in a very high percent of patients.^[19] The consequence of this deletion is the abnormal fusion of two genes- DNAJB1, which is the gene that codes for the heat shock protein 40 (Hsp40), and PRKACA. Further analyses of fibrolamellar hepatocellular carcinoma tissues show an increase in protein levels of this DNAJ-PKAc fusion protein. This is consistent with the hypothesis that increased kinase in liver tissues can initiate or perpetuate this rare form of liver cancer. Given the wealth of information on the three dimensional structures of DNAJ and PKA Cα there is some hope that new drugs can be developed to target this atypical and potentially tumorigenic fusion kinase.

Notes

1. ^ ^{a b c} ENSG00000288516 GRCh38: Ensembl release 89: ENSG00000072062, ENSG00000288516 – Ensembl, May 2017
2. ^ ^{a b c} GRCm38: Ensembl release 89: ENSMUSG00000005469 – Ensembl, May 2017
3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. ^ ^{a b} Taskén K, Solberg R, Zhao Y, Hansson V, Jahnsen T, Siciliano MJ (Sep 1996). "The gene encoding the catalytic subunit C alpha of cAMP-dependent protein kinase (locus PRKACA) localizes to human chromosome region 19p13.1". Genomics. 36 (3): 535–8. doi:10.1006/geno.1996.0501. PMID 8884279.
6. ^ Maller JL, Krebs EG (Mar 1977). "Progesterone-stimulated meiotic cell division in Xenopus oocytes. Induction by regulatory subunit and inhibition by catalytic subunit of adenosine 3':5'-monophosphate-dependent protein kinase". The Journal of Biological Chemistry. 252 (5): 1712–8. doi:10.1016/S0021-9258(17)40606-5. PMID 190238.
7. ^ Lester LB, Faux MC, Nauert JB, Scott JD (Mar 2001). "Targeted protein kinase A and PP-2B regulate insulin secretion through reversible phosphorylation". Endocrinology. 142 (3): 1218–27. doi:10.1210/endo.142.3.8023. PMID 11181538.
8. ^ Snyder EM, Colledge M, Crozier RA, Chen WS, Scott JD, Bear MF (Apr 2005). "Role for A kinase-anchoring proteins (AKAPS) in glutamate receptor trafficking and long term synaptic depression". The Journal of Biological Chemistry. 280 (17): 16962–8. doi:10.1074/jbc.M409693200. PMC 3923403. PMID 15718245.
9. ^ Fischer EH, Krebs EG (Sep 1955). "Conversion of phosphorylase b to phosphorylase a in muscle extracts". The Journal of Biological Chemistry. 216 (1): 121–32. doi:10.1016/S0021-9258(19)52289-X. PMID 13252012.
10. ^ Knighton DR, Zheng JH, Ten Eyck LF, Ashford VA, Xuong NH, Taylor SS, Sowadski JM (Jul 1991). "Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase". Science. 253 (5018): 407–14. Bibcode:1991Sci...253..407K. doi:10.1126/science.1862342. PMID 1862342.
11. ^ ^{a b} Langeberg LK, Scott JD (Apr 2015). "Signalling scaffolds and local organization of cellular behaviour". Nature Reviews Molecular Cell Biology. 16 (4): 232–44. doi:10.1038/nrm3966. PMC 4722875. PMID 25785716.
12. ^ Søberg K, Jahnsen T, Rognes T, Skålhegg BS, Laerdahl JK (2013-01-01). "Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits". PLOS ONE. 8 (4): e60935. Bibcode:2013PLoSO...860935S. doi:10.1371/journal.pone.0060935. PMC 3625193. PMID 23593352.
13. ^ Uhler MD, Chrivia JC, McKnight GS (Nov 1986). "Evidence for a second isoform of the catalytic subunit of cAMP-dependent protein kinase". The Journal of Biological Chemistry. 261 (33): 15360–3. doi:10.1016/S0021-9258(18)66717-1. PMID 3023318.
14. ^ Beebe SJ, Oyen O, Sandberg M, Frøysa A, Hansson V, Jahnsen T (Mar 1990). "Molecular cloning of a tissue-specific protein kinase (C gamma) from human testis--representing a third isoform for the catalytic subunit of cAMP-dependent protein kinase". Molecular Endocrinology. 4 (3): 465–75. doi:10.1210/mend-4-3-465. PMID 2342480.
15. ^ Krebs EG, Beavo JA (June 1979). "Phosphorylation-dephosphorylation of enzymes". Annual Review of Biochemistry. 48 (1): 923–59. doi:10.1146/annurev.bi.48.070179.004423. PMID 38740.
16. ^ Welch EJ, Jones BW, Scott JD (Apr 2010). "Networking with AKAPs: context-dependent regulation of anchored enzymes". Molecular Interventions. 10 (2): 86–97. doi:10.1124/mi.10.2.6. PMC 2895371. PMID 20368369.
17. ^ Dodge-Kafka KL, Langeberg L, Scott JD (Apr 2006). "Compartmentation of cyclic nucleotide signaling in the heart: the role of A-kinase anchoring proteins". Circulation Research. 98 (8): 993–1001. doi:10.1161/01.RES.0000218273.91741.30. PMID 16645149.
18. ^ Lacroix A, Feelders RA, Stratakis CA, Nieman LK (Aug 2015). "Cushing's syndrome". Lancet. 386 (9996): 913–27. doi:10.1016/S0140-6736(14)61375-1. PMID 26004339. S2CID 22892253.
19. ^ Honeyman JN, Simon EP, Robine N, Chiaroni-Clarke R, Darcy DG, Lim II, Gleason CE, Murphy JM, Rosenberg BR, Teegan L, Takacs CN, Botero S, Belote R, Germer S, Emde AK, Vacic V, Bhanot U, LaQuaglia MP, Simon SM (Feb 2014). "Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma". Science. 343 (6174): 1010–4. Bibcode:2014Sci...343.1010H. doi:10.1126/science.1249484. PMC 4286414. PMID 24578576.