List of distinct cell types in the adult human body

Part of a series of lists about
Human anatomy
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The adult human body is estimated to contain about 30 trillion (3×1013) human cells, with the number varying between 20 to 40 trillion depending on factors such as sex, age, and weight. Additionally, there are approximately an equal number of bacterial cells. The exact count has not yet been empirically measured in its entirety and is based on smaller samples of empirical observation.[1][2][3][4][5][6]

Human cells have been categorized into over 500 cell types based on their location and function within the body.[2] There is usually a significant variation in these cell types depending on the specific surface proteins they possess. Approximately 1,000 cells have been assigned unique names, most of which are documented in the HubMap database.

The main cellular components of the human body by count[4]
Cell type % cell count
Erythrocytes (red blood cells) 84.0
Platelets 4.9
Bone marrow cells 2.5
Vascular endothelial cells 2.1
Lymphocytes 1.5
Hepatocytes 0.8
Neurons and glia 0.6
Bronchial endothelial cells 0.5
Epidermal cells 0.5
Respiratory interstitial cells 0.5
Adipocytes (fat cells) 0.2
Dermal fibroblasts 0.1
Muscle cells 0.001
Other cells 2.0

In 1996, scientists revealed a 'map' of 16000 human genes.[7] This lead to estimates that humans likely had around 100 000 genes[8] (or regions that code for human proteins). However, actual sequencing did not start before around 1999, and it was not until 2003[9] that the first complete draft of a human genome revealed that there was roughly 20000-25000, as most DNA does not code for any protein but rather serve other more administrative functions or leftovers from the past. It is difficult to say that there have not been similar mistakes when estimating how many cells humans have as there are still substantial gaps in understanding human cells.[citation needed]

Major efforts to map all human cells

Several efforts have been made to make a list or a map of all human cells.[10][11][12] One of the largest and most recent is the HuBMAP (Human BioMolecular Atlas Program).[13] They managed to organize 1551 samples across 17 collections. However, this project still only mapped about 31 of the human bodies' 70 organs. Their datasets and visualisations place great emphasis on biomarkers and location in the body, but less on cell development and how cells can change over time. Usually specific surface proteins are used to identify cells, and based on this they are put into different categories. Another major effort to make an overview of these proteins that allows us to observe cell types is the Swedish Protein Atlas.[14]

The Human Brain Project has attempted to map the human brain,[15][16] although much of the publicly accessible model does not have cellular resolution.

Standards and naming conventions

So far not all cells which can be found in the human body have been documented. There is no good way to make the experiment where one checks if all celltypes identified so far could be taken from an measured in a single donor, proving that the cells types are universal to all humans. This is partly due to a lack of standards, as scientists are still not entirely sure what is needed to measure, in order to capture every cell type which can be found.[citation needed]


A good few attempts have been made and is being made, for creating standards for identifying cells consistently,[17] as well as for how to work with especially STEM cells.[18] However there is still no standard which are used industry wide, nor any definitions which have been accepted by the wider scientific community. Often making it difficult to say weather some collected and observed cells are really one or multiple types of cells. This lack of standards makes it difficult to estimate how many cell types and how many of each cell types can be found in the human body, as well as difficult to predict which young cells one would need to develop with mature cells. The list on this Wikipedia article also suffers to some inconsistencies due to multiple sources using different conventions.[citation needed]

Complete lists of human cells known so far

Name Progenitor

(precursor cell)

Predecessor Cells Location in Body Function Cell type Cell subtype Originally derived from Known biomarkers
Brunner's gland cell crypt basal stem cells Zymogen cell, Goblet cell, Entero-endocrine, Enterocyte in duodenum, duodenal submucosa[19] enzyme and alkaline mucus secretion Exocrine secretory epithelial cells Endoderm
Insulated goblet cell Respiratory and digestive tracts mucus secretion
Foveolar cell Stomach
Chief cell pepsinogen secretion
Parietal cell hydrochloric acid secretion
Pancreatic acinar cell Pancreas (confirmation needed) bicarbonate and digestive enzyme secretion
Paneth cell small intestine lysozyme secretion
Type II pneumocyte Lungs surfactant secretion
Club cell
Type I pneumocyte formation of the Blood-Gas Barrier Barrier cell
Gall bladder epithelial cell Gall bladder
Centroacinar cell Pancreas (salivary glands)
Intestinal brush border cell (with microvilli)
K cell gastric inhibitory peptide secretion Hormone-secreting cells Enteroendocrine cell
L cell glucagon-like peptide-1, peptide YY3-36, oxyntomodulin, and glucagon-like peptide-2) secretion
I cell cholecystokinin (CCK) secretion
G cell gastrin secretion
Enterochromaffin cell serotonin secretion
Enterochromaffin-like cell histamine secretion
N cell neurotensin secretion
S cell secretin secretion
D cell somatostatin secretion
Mo cell (or M cell) motilin secretion
other hormones secreted: vasoactive intestinal peptide, substance P, alpha and gamma-endorphin, bombesin
Thyroid epithelial cell Thyroid gland cells
Parafollicular cell
Parathyroid chief cell Parathyroid gland cells
Oxyphil cell
Alpha cell glucagon secretion Pancreatic islets (islets of Langerhans)
Beta cell insulin and amylin secretion
Delta cell somatostatin secretion
Epsilon cell ghrelin secretion
PP cell (gamma cell) pancreatic polypeptide secretion
Salivary gland mucous cell Exocrine secretory epithelial cells Ectoderm
Salivary gland serous cell
Von Ebner's gland cell in tongue (washes taste buds)
Mammary gland cell (milk secretion)
Lacrimal gland cell (tear secretion)
Ceruminous gland cell in ear (earwax secretion)
Eccrine sweat gland dark cell (glycoprotein secretion)
Eccrine sweat gland clear cell (small molecule secretion)
Apocrine sweat gland cell (odoriferous secretion, sex-hormone sensitive)
Gland of Moll cell in eyelid (specialized sweat gland)
Sebaceous gland cell (lipid-rich sebum secretion)
Bowman's gland cell in nose (washes olfactory epithelium)
Corticotropes Hormone-secreting cells Anterior/Intermediate pituitary cells
Gonadotropes Anterior/Intermediate pituitary cells
Lactotropes Anterior/Intermediate pituitary cells
Melanotropes Anterior/Intermediate pituitary cells
Somatotropes Anterior/Intermediate pituitary cells
Thyrotropes Anterior/Intermediate pituitary cells
Magnocellular neurosecretory cells secrete oxytocin and vasopressin
Parvocellular neurosecretory cells secrete thyrotropin-releasing hormone (TRH), corticotropin-releasing hormone (CRH), vasopressin, oxytocin, neurotensin, and prolactin
Chromaffin cells (adrenal gland)
Keratinocyte (differentiating epidermal cell) Epithelial cells
Epidermal basal cell (stem cell)
Melanocyte
Trichocyte (gives rise to hair and nail cells)
Medullary hair shaft cell Trichocyte
Cortical hair shaft cell Trichocyte
Cuticular hair shaft cell Trichocyte
Huxley's layer hair root sheath cell Trichocyte
Henle's layer hair root sheath cell Trichocyte
Outer root sheath hair cell Trichocyte
Surface epithelial cell cornea, tongue, mouth, nasal cavity, distal anal canal, distal urethra, and distal vagina
basal cell (stem cell) cornea, tongue, mouth, nasal cavity, distal anal canal, distal urethra, and distal vagina
Striated duct cell (salivary glands)
Lactiferous duct cell (mammary glands)
Ameloblast (deposit tooth enamel)
Odontoblast (tooth dentin formation) Oral cells
Cementoblast (tooth cementum formation)
Auditory inner hair cells of organ of Corti Sensory transducer cells
Auditory outer hair cells of organ of Corti
Basal cells of olfactory epithelium (stem cell for olfactory neurons)
Cold-sensitive primary sensory neurons
Heat-sensitive primary sensory neurons
Merkel cells of epidermis
Olfactory receptor neurons
Pain-sensitive primary sensory neurons
Photoreceptor rod cells Photoreceptor cells of retina in eye
Photoreceptor blue-sensitive cone cells of eye Photoreceptor cells of retina in eye
Photoreceptor green-sensitive cone cells of eye Photoreceptor cells of retina in eye
Photoreceptor red-sensitive cone cells of eye Photoreceptor cells of retina in eye
Proprioceptive primary sensory neurons
Touch-sensitive primary sensory neurons
Chemoreceptor glomus cells of carotid body cell (blood pH sensor)
Outer hair cells of vestibular system of ear (acceleration and gravity)
Inner hair cells of vestibular system of ear
Taste receptor cells of taste bud
Cholinergic neurons (various types) Autonomic neuron cells
Adrenergic neural cells (various types)
Peptidergic neural cells (various types)
Inner pillar cells of organ of Corti Sense organ and peripheral neuron supporting cells
Outer pillar cells of the organ of Corti
Inner phalangeal cells of organ of Corti
Outer phalangeal cells of organ of Corti
Border cells of organ of Corti
Hensen's cells of organ of Corti
Vestibular apparatus supporting cells
Taste bud supporting cells
Olfactory epithelium supporting cells
Olfactory ensheathing cells
Schwann cells
Satellite glial cells
Enteric glial cells
Basket cells Central nervous system neurons and glial cells Neuron Interneurons
Cartwheel cells Interneurons
Stellate cells Interneurons
Golgi cells Interneurons
Granule cells Interneurons
Lugaro cells Interneurons
Interneurons
Martinotti cells Interneurons
Chandelier cells Interneurons
Cajal–Retzius cells Interneurons
Double-bouquet cells Interneurons
Neurogliaform cells Interneurons
Retina horizontal cells Interneurons
Starburst amacrine cells Interneurons - > Amacrine cells
Renshaw cells Interneurons - >Spinal interneurons
Spindle neurons Principal cells
Fork neurons Principal cells
Place cells Principal cells-> Pyramidal cells
Grid cells Principal cells-> Pyramidal cells
Speed cells Principal cells-> Pyramidal cells
Head direction cells Principal cells-> Pyramidal cells
Betz cells Principal cells-> Pyramidal cells
Boundary cells Principal cells->Stellate cells
Bushy cells Principal cells
Purkinje cells Principal cells
Medium spiny neurons Principal cells
Astrocytes
Oligodendrocytes
Tanycytes Ependymal cells
Pituicytes
Anterior lens epithelial cell Lens cells
Crystallin-containing lens fiber cell
White fat cell Right atrium, atrioventricular junction, left atrium, left ventricle, right ventricle, epicardium Myocardium, atriventricular node Metabolism and storage cells Adipocytes Mesoderm (gene:)FASN, GPAM, LEP,[20]
Brown fat cell
Liver lipocyte
Cells of the Zona glomerulosa produce mineralocorticoids Secretory cells Cells of the adrenal cortex
Cells of the Zona fasciculata produce glucocorticoids
Cells of the zona reticularis produce androgens
Theca Interna cell ovarian follicle secreting estrogen
Corpus luteum cell ruptured ovarian follicle secreting progesterone
Granulosa lutein cells Corpus luteum cell
Theca lutein cells
Leydig cell testes secreting testosterone
Seminal vesicle cell (secretes seminal fluid components, including fructose for swimming sperm)
Prostate gland cell (secretes seminal fluid components)
Bulbourethral gland cell (mucus secretion)
Bartholin's gland cell (vaginal lubricant secretion)
Gland of Littré cell (mucus secretion)
Uterus endometrium cell (carbohydrate secretion)
Juxtaglomerular cell (renin secretion)
Macula densa cell kidney
Peripolar cell
Mesangial cell
Parietal epithelial cell Urinary system Barrier cells
Podocyte
Proximal tubule brush border cell
Loop of Henle thin segment cell
Kidney distal tubule cell
Principal cell Kidney collecting duct cell
Intercalated cell Epithelial / Barrier cells Mesoderm
Transitional epithelium (lining urinary bladder) Barrier cells Mesoderm
Duct cell (of seminal vesicle, prostate gland, etc.) Reproductive system Barrier cells
Efferent ducts cell
Epididymal principal cell
Epididymal basal cell
Endothelial cells Circulatory system, capillary ABCC9, KCNJ8, RGS5
Planum semilunar epithelial cell of vestibular system of ear (proteoglycan secretion) Extracellular matrix cells
Organ of Corti interdental epithelial cell (secreting tectorial membrane covering hair cells)
Loose connective tissue fibroblasts
Corneal fibroblasts (corneal keratocytes)
Tendon fibroblasts
Bone marrow reticular tissue fibroblasts
Other nonepithelial fibroblasts
Hepatic stellate cell (Ito cell) Liver? Pericyte
Nucleus pulposus cell intervertebral disc
Hyaline cartilage chondrocyte
Fibrocartilage chondrocyte
Elastic cartilage chondrocyte
Osteoblast/osteocyte
Osteoprogenitor cell (stem cell of osteoblasts)
Hyalocyte vitreous body of eye
Stellate cell perilymphatic space of the ear
Pancreatic stellate cell
Red skeletal muscle cell (slow twitch) Contractile cells Skeletal muscle cells
White skeletal muscle cell (fast twitch)
Intermediate skeletal muscle cell
Nuclear bag cell muscle spindle
Nuclear chain cell muscle spindle
Myosatellite cell (stem cell)
Cardiac muscle cell Cardiac muscle cells
SA node cell
Purkinje fiber cell
Smooth muscle cell (various types) iris
Myoepithelial cell exocrine glands
Erythrocyte (red blood cell) erythroblasts Blood and immune system cells
Megakaryocyte (platelet precursor)
Platelets if considered distinct cells, currently there's debate on the subject.
Monocyte (white blood cell)
Connective tissue macrophage (various types)
Epidermal Langerhans cell
Osteoclast in bone
Dendritic cell (in lymphoid tissues)
Microglial cell (in central nervous system)
Neutrophil granulocyte precursors (myeloblast, promyelocyte, myelocyte, metamyelocyte)
Eosinophil granulocyte and precursors???
Basophil granulocyte and precursors???
Mast cell
Helper T cell
Regulatory T cell
Cytotoxic T cell
Natural killer T cell
B cell(/lymphocyte) Left atrium, left ventricle, septum, right ventricle, epicaridum Myocardium
Plasma cell
Natural killer cell
Hematopoietic stem cells and committed progenitors for the blood and immune system (various types)
Oogonium/oocyte Germ cells
Spermatid
Spermatocyte
Spermatogonium cell Stem cell for spermatocyte
Spermatozoon
Granulosa cell In the ovaries Nurse cells
Sertoli cell In the testis
Epithelial reticular cell In the thymus
Interstitial kidney cells Kidney Interstitial cells
Amex_153 unknown unknown brain None None unknown None PPP1R1C, FER1L6-AS2, RP11-421N8.3
Amex_154 unknown unknown brain None None unknown None DCSTAMP, PTGER3, RP11-412K20.1, RP11-33A14.1
Amex_155 unknown unknown brain None None unknown None RP11-412K20.1, CTD-2195H9.1, RP11-421N8.3
Amex_156 unknown unknown brain None None unknown None TACR3, MOXD1, RP11-799O21.2, RP11-63G10.4
Amex_157 unknown unknown brain None None unknown None TG, LAMA3, RP11-799O21.2
Amex_158 unknown unknown brain None None unknown None TACR3, WDR86, NPFFR2
Amex_159 unknown unknown brain None None unknown None POSTN, LINC01821, CALCRL
Amex_160 unknown unknown brain None None unknown None PTGER3, PLEKHG4B, NPFFR2, MSC-AS1
Amex_161 unknown unknown brain None None unknown None MEPE, TG, S100Z
Amex_162 unknown unknown brain None None unknown None POSTN, CCBE1, AC067959.1
Amex_171 unknown unknown brain None None unknown None LINC01876, RP11-60A8.1, CTD-2058B24.2
Amex_172 unknown unknown brain None None unknown None CRHR2, LINC02055, RP11-60A8.1, RP11-370B11.4
Amex_173 unknown unknown brain None None unknown None AC092684.1, RP11-60A8.1
Amex_174 unknown unknown brain None None unknown None FER1L6-AS2, RP11-418J17.3, RP11-60A8.1
Amex_175 unknown unknown brain None None unknown None LINC02248, RP11-153I24.5
Amex_405 unknown unknown brain None None unknown None RXFP1, NDST4, PRLR, MEIS2, CDH13
Amex_406 unknown unknown brain None None unknown None RXFP2, CARTPT, IRAG2
Amex_407 unknown unknown brain None None unknown None PAPPA2, LHX9
Amex_408 unknown unknown brain None None unknown None EOMES, HPSE2, RELN
Amex_419 unknown unknown brain None None unknown None SCN5A, CARM1P1, PTH2R, NR2F2-AS1, CTC-552D5.1
Astro L1 FGFR3 SERPINI2 unknown unknown brain None None unknown None CFAP47, WDR49
Astro L1-6 FGFR3 AQP1 unknown unknown brain None None unknown None TNC
Astro L1-6 FGFR3 PLCG1 unknown unknown brain None None unknown None COL5A3, LOC105376917
Astro_52 unknown unknown brain None None unknown None LINC01727, COL5A3
Astro_53 unknown unknown brain None None unknown None GLI3, COL5A3
Astro_54 unknown unknown brain None None unknown None F11-AS1, ETNPPL, GLI3, OBI1-AS1
Astro_55 unknown unknown brain None None unknown None FGFR3, HPSE2, WIF1
Astro_56 unknown unknown brain None None unknown None TNC, OBI1-AS1, GPC5
Astro_57 unknown unknown brain None None unknown None TNC, FGFR3, OBI1-AS1, LINC00609, RP11-134O15.3
Astro_58 unknown unknown brain None None unknown None ID3, LINC00499, FGFR3
Astro_59 unknown unknown brain None None unknown None LGR6, ITPRID1, OBI1-AS1, HPSE2
Astro_60 unknown unknown brain None None unknown None TNC, LINC00499, EDNRB, APOE
Astro_61 unknown unknown brain None None unknown None AQP1, GFAP, RP11-259K15.2
Astro_62 unknown unknown brain None None unknown None TNC, LINC00836, APOE
Astro_63 unknown unknown brain None None unknown None GFAP, CRYAB
Astro_64 unknown unknown brain None None unknown None RP11-297I23.1, RP11-517I3.1
Astrocyte unknown unknown spinal cord None None unknown None SLC14A1
B Cell unknown unknown lymph node None None unknown None CD19, MS4A1, HLA-DRA
B Cell Zone Reticular Cell unknown unknown lymph node None None unknown None CXCL12, TNFSF11
B cell unknown unknown large intestine None None unknown None CD21, CD19, CD20, CD79a
B cell unknown unknown large intestine None None unknown None CD19, CD79a
B cell unknown unknown large intestine None None unknown None CD11b, CD294
B cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, MS4A1, BANK1, CD79A, CD22, BANK1, CD19
B cell unknown unknown Small Intestine None None unknown None MKI67, MS4A1, PAX5
B cell unknown unknown Uterus None None unknown None CD69, CCL5, MS4A1, CXCR4
BCHE (butyrylcholinesterase) cell unknown unknown Small Intestine None None unknown None BEST4, CFTR, guanylin, uroguanylin
Bcell_0 unknown unknown brain None None unknown None MS4A1
Bgl_51 unknown unknown brain None None unknown None LINC01727, LAMA2
Blood Vessel Endothelial Cell unknown unknown lymph node None None unknown None CAV1, CCL14, CD34, CD74, CD209, CD300LG, DARC, EMCN, ESAM, ICAM1, JAM2, HLA-DRA, HLA-DRB1, HLA-DPA1, HLA-DPB1, MARCO, PLVAP, PVRL2, SPARCL1
CA13_119 unknown unknown brain None None unknown None CTXND1, RP11-153I24.5
CA13_163 unknown unknown brain None None unknown None POSTN, AC004862.6
CA13_169 unknown unknown brain None None unknown None ITGA4, RP11-191L9.4
CA13_179 unknown unknown brain None None unknown None COL5A2, COL24A1, AC004538.3
CA13_180 unknown unknown brain None None unknown None BHLHE22, RP11-142C4.6, AC004538.3
CA13_181 unknown unknown brain None None unknown None SLC30A8, COL5A2, AC004538.3
CA13_182 unknown unknown brain None None unknown None FNDC1, CTXND1, COL5A2, RP11-167H9.4, RP11-60A8.1, AC004538.3
CA13_183 unknown unknown brain None None unknown None ABCA13, CASC6, RP11-60A8.1, AC004538.3
CA13_184 unknown unknown brain None None unknown None LINC02153, RP11-60A8.1, AC004538.3
CA13_185 unknown unknown brain None None unknown None NTS, LINC02153, RP11-60A8.1
CA13_186 unknown unknown brain None None unknown None NTS, RP11-369E15.3
CA13_187 unknown unknown brain None None unknown None GABRQ, ITGA4, AC004538.3
CA13_188 unknown unknown brain None None unknown None CTXND1, LINC02055, COL24A1, CCBE1
CA13_189 unknown unknown brain None None unknown None CCN1, CTXND1, ATP10A
CA4_190 unknown unknown brain None None unknown None HGF, FREM2
CA4_191 unknown unknown brain None None unknown None NTS, ST18
CA4_192 unknown unknown brain None None unknown None CASR, ITGA4, ATP10A
CA4_193 unknown unknown brain None None unknown None SCGN, SLC47A1, XACT, HHIP
CA4_194 unknown unknown brain None None unknown None HOPX, RPL26, C9orf16
CA4_195 unknown unknown brain None None unknown None ITGA4, NPNT, COL5A2, HHIP
CA4_196 unknown unknown brain None None unknown None LINC02196, ITGA4
CA4_197 unknown unknown brain None None unknown None LINC02196, RP11-719N9.1
CA4_198 unknown unknown brain None None unknown None CTXND1, COL5A2, EYS
CAP1 general capillary gCap unknown unknown respiratory system None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, DTL, IL7R, APLNR, PLVAP, GPIHBP1
CAP2 aerocyte capillary aCap unknown unknown respiratory system None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, EDNRB, APLN, CA4
CBI_298 unknown unknown brain None None unknown None SLC6A5, VCAN, RELN
CBI_299 unknown unknown brain None None unknown None SLC6A5, IGF2BP2, FNDC1
CBI_300 unknown unknown brain None None unknown None SLC4A11, NDNF
CBI_301 unknown unknown brain None None unknown None SLC6A5, SCIN, RREB1
CBI_302 unknown unknown brain None None unknown None CPLX4, RP11-265I24.1
CBI_303 unknown unknown brain None None unknown None LYPD6, RP11-265I24.1
CBI_304 unknown unknown brain None None unknown None SCGN, RP11-274H24.2
CBI_305 unknown unknown brain None None unknown None TFAP2B, NTN1, LINC02552, BMPR1B
CBI_306 unknown unknown brain None None unknown None SCGN, MARCHF11, PTPRK
CBI_307 unknown unknown brain None None unknown None SCGN, LINC02552, VCAN, NXPH1
CD14 monocyte unknown unknown Blood None None unknown None VCAN, CST3, CD14, S100A8, S100A9, FCN1
CD14 monocyte unknown unknown Bone marrow None None unknown None VCAN, CST3, CD14, S100A8, S100A9, FCN1
CD16 monocyte unknown unknown Blood None None unknown None HES4, MS4A7, IFITM3, FCGR3A, CXCL16, LST1
CD16 monocyte unknown unknown Bone marrow None None unknown None HES4, MS4A7, IFITM3, FCGR3A, CXCL16, LST1
CD4 T cell effector memory CD45RA unknown unknown Blood None None unknown None CD3D, TRAC, IL4R, STAT1, MAL, SOCS1, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, NME1
CD4 T cell effector memory CD45RA unknown unknown Bone marrow None None unknown None CD3D, TRAC, IL4R, STAT1, MAL, SOCS1, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, NME1
CD4 T cell memory unknown unknown Blood None None unknown None CD3D, TRAC, IFI6, LGALS3, PDZD8, ANXA2, CRIP1
CD4 T cell memory unknown unknown Blood None None unknown None CD3D, TRAC, IL4R, STAT1, MAL, SOCS1, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, NME1
CD4 T cell memory unknown unknown Blood None None unknown None PDZD8, CXCR6, PRF1, CRIP1, ITGA1, GZMB
CD4 T cell memory unknown unknown Bone marrow None None unknown None CD3D, TRAC, IFI6, LGALS3, PDZD8, ANXA2, CRIP1
CD4 T cell memory unknown unknown Bone marrow None None unknown None CD3D, TRAC, IL4R, STAT1, MAL, SOCS1, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, NME1
CD4 naive unknown unknown Blood None None unknown None CD3D, TRAC, TRBC1, IL7R, TRAT1, LTB, AQP3, CD40LG
CD4 naive unknown unknown Bone marrow None None unknown None CD3D, TRAC, TRBC1, IL7R, TRAT1, LTB, AQP3, CD40LG
CD4+ T unknown unknown Small Intestine None None unknown None CD3D, CD2, CD4
CD4+ T cell unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD4
CD4+ T cell unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD4
CD4+ T cell resident memory unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, CD69, CD44, CD4
CD4+ T memory T cell unknown unknown thoracic thymus None None unknown None ANXA1, AP3M2, CCR7, CD69, GPR183, IL7R, KLF2, LTB, RGCC, RPL36A
CD4+ T single positive thymocyte unknown unknown thoracic thymus None None unknown None ABLIM1, ADD3, C1orf228, CAMK4, DENND2D, GIMAP7, ID2, RPL17, SELL
CD4+ T single positive thymocyte unknown unknown thoracic thymus None None unknown None ABLIM1, ADD3, SELL, CAMK4, DENND2D, GIMAP7, ID2, RPL17
CD56 bright Natural Killer unknown unknown Bone marrow None None unknown None TRDC, KLRB1, CLIC3, CST7, XCL1, GZMK
CD56 bright Natural killer unknown unknown Blood None None unknown None TRDC, KLRB1, CLIC3, CST7, XCL1, GZMK
CD8 T cell effector memory unknown unknown Blood None None unknown None CD3D, TRAC, CCL3, CCL4, HOPX, GZMB
CD8 T cell effector memory unknown unknown Bone marrow None None unknown None CD3D, TRAC, CCL3, CCL4, HOPX, GZMB
CD8 T cell effector memory CD45RA unknown unknown Blood None None unknown None CD3D, TRAC, PRF1, HOPX, NKG7, GNLY, IFIT3, KLRD1, CCL5
CD8 T cell effector memory CD45RA unknown unknown Bone marrow None None unknown None CD3D, TRAC, PRF1, HOPX, NKG7, GNLY, IFIT3, KLRD1, CCL5
CD8 T cell memory unknown unknown Bone marrow None None unknown None PDZD8, CXCR6, PRF1, CRIP1, ITGA1, GZMB
CD8 naive unknown unknown Blood None None unknown None CD3D, TRAC, AQP3, IL7R
CD8 naive unknown unknown Bone marrow None None unknown None CD3D, TRAC, AQP3, IL7R
CD8+ T unknown unknown Small Intestine None None unknown None MGLL, TAGLN, CD3D, CD8A, CD2
CD8+ T cell unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD8
CD8+ T cell resident memory unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, CD69, CD8A, NOTCH1, ITGA1, ITGAE
CD8+ T memory unknown unknown thoracic thymus None None unknown None CCL4, CCL5, CD8A, CD8B, CRTAM, CST7, GZMK, LYAR, NKG7, RGCC
CD8+ T single positive thymocyte unknown unknown thoracic thymus None None unknown None ACTN1, CD7, CD8A, CD8B, CHI3L2, GZMM, IL7R, LRRN3, STK17A
CD8aa(I) thymocyte unknown unknown thoracic thymus None None unknown None CD2, CD8A, CD27, CD28, LCP2, LEF1, NUCB2, PRKCH, PTPN7, TRAC
CD8aa(II) thymocyte unknown unknown thoracic thymus None None unknown None ACTN1, CD7, CTSW, HCST, IKZF2, MME, SMC4, SMIM24, TRGC2, ZNF683
CGE_276 unknown unknown brain None None unknown None VIP, SVEP1
CGE_277 unknown unknown brain None None unknown None SCGN, DDR2
CGE_278 unknown unknown brain None None unknown None DDR2, WIF1, CHRNA7
CGE_279 unknown unknown brain None None unknown None FREM2, CXCL14, DOCK8
CGE_280 unknown unknown brain None None unknown None LAMA3, CTD-2008L17.2
CGE_281 unknown unknown brain None None unknown None HTR3A, EDNRA
CGE_282 unknown unknown brain None None unknown None ADAM33, CTC-367F4.1
CGE_283 unknown unknown brain None None unknown None CXCL14, SGO1-AS1, SYT10, SEMA3C
CGE_284 unknown unknown brain None None unknown None PCDH18, CCN2, CXCL14, RP1-35C21.2
CGE_285 unknown unknown brain None None unknown None VIP, PENK
CGE_286 unknown unknown brain None None unknown None NMBR, NDNF, CXCL14
CGE_287 unknown unknown brain None None unknown None MYH11, ADAMTS20, EYA4
CGE_288 unknown unknown brain None None unknown None CXCL14, CRH, ROR2, CA2
CGE_289 unknown unknown brain None None unknown None TAC3, AJ006995.3, AC133680.1
CGE_290 unknown unknown brain None None unknown None FLT1, VIP, CHRM2
CGE_291 unknown unknown brain None None unknown None NPR3, EDNRA, RP1-35C21.2
CGE_292 unknown unknown brain None None unknown None NPR3, PPP1R1C, CRH, RP11-197H3.1
CGE_293 unknown unknown brain None None unknown None HS3ST3A1, IQGAP2, RP11-197H3.1
CGE_294 unknown unknown brain None None unknown None ABI3BP, VIP
CGE_295 unknown unknown brain None None unknown None VIP, CRH, RXRG, RP11-197H3.1
CGE_296 unknown unknown brain None None unknown None TAC3, CXCL14, CMTM8, LYPD6
COP_37 unknown unknown brain None None unknown None GPR17, BCAS1, PRRX1
COP_38 unknown unknown brain None None unknown None BCAS1, RP11-89N17.4
COP_39 unknown unknown brain None None unknown None TF, CTD-2545M3.8
COP_41 unknown unknown brain None None unknown None OPALIN, AC084149.2
COP_42 unknown unknown brain None None unknown None LINC01608, CNDP1, NTNG1
COP_43 unknown unknown brain None None unknown None SLC5A11, MOBP
COP_75 unknown unknown brain None None unknown None FOLR1, C1QTNF5
Centroblast unknown unknown lymph node None None unknown None AICDA, BCL6, CD19, CD27, CXCR4, Mki67, MS4A1
Centrocyte unknown unknown lymph node None None unknown None BCL6, CD19, CD83, Mki67, MS4A1
Chrp_76 unknown unknown brain None None unknown None PLP1, OTX2-AS1, ST18, RP11-690J15.1
Chrp_77 unknown unknown brain None None unknown None FOLR1, SERPINF1, RP11-690J15.1
Chrp_78 unknown unknown brain None None unknown None POU2AF1, CRYBG1, RP11-729M20.1
Chrp_79 unknown unknown brain None None unknown None POU2AF1, TRPV4, ABCA4
Chrp_80 unknown unknown brain None None unknown None HS3ST3A1, RP11-690J15.1
Chrp_81 unknown unknown brain None None unknown None HPD, C1QTNF5
Chrp_82 unknown unknown brain None None unknown None GPNMB, TTR
Conventional Dendritic Cell cDC1 unknown unknown lymph node None None unknown None XCR1, CADM1, CLEC9A, BATF3, IDO1
Conventional Dendritic Cell cDC2 unknown unknown lymph node None None unknown None CD1C, CLEC10A, CD86
Cycling B unknown unknown palatine tonsil None None unknown None E2F8, CDCA2, NUGGC, CLSPN, ANLN, MYBL1, FAM111B, KIF4A, NUF2, GTSE1
DG_199 unknown unknown brain None None unknown None POSTN, bP-21201H5.1
DG_200 unknown unknown brain None None unknown None CHRNA1, SCART1, RP11-217C7.1
DG_201 unknown unknown brain None None unknown None SLC47A1, RP11-217C7.1, RP11-719N9.1
DG_202 unknown unknown brain None None unknown None TTR, ADRA1A, RP11-719N9.1
DG_203 unknown unknown brain None None unknown None LINC02248, ST18, RP11-484N11.1
DG_204 unknown unknown brain None None unknown None LINC00499, TTR, CASC6, RP11-287J11.1
DG_205 unknown unknown brain None None unknown None CTD-2215L10.1, RP11-217C7.1, RP11-287J11.1
DLCT6b_100 unknown unknown brain None None unknown None SULF1, LINC02232, RXFP1, SEMA5A
DLCT6b_101 unknown unknown brain None None unknown None NFIA-AS2, RP11-120L14.1, RP11-467L24.1
DLCT6b_102 unknown unknown brain None None unknown None LINC01821, ADAMTSL1, RP11-467L24.1, AC064875.2
DLCT6b_103 unknown unknown brain None None unknown None CCN2, PLA2G4A, RP11-467L24.1
DLCT6b_104 unknown unknown brain None None unknown None TRIM22, RP11-467L24.1
DLCT6b_105 unknown unknown brain None None unknown None LINC01680, CCN2, RP4-736H5.3
DLCT6b_106 unknown unknown brain None None unknown None EDNRA, RP11-81D17.1, CTD-2050E21.1
DLCT6b_107 unknown unknown brain None None unknown None ITGA11, SYT6
DLCT6b_108 unknown unknown brain None None unknown None LINC01821, ADAMTSL1, SEMA3E, CTB-57H20.1, RP11-369E15.3
DLCT6b_109 unknown unknown brain None None unknown None LINC02153, LINC02263, LINC01821, RP11-369E15.3, AC114765.1
DLCT6b_110 unknown unknown brain None None unknown None CAV1, TRIM22, SULF1, RP11-640F22.1
DLCT6b_111 unknown unknown brain None None unknown None TMEM233, GABRQ, FBXL21P, SULF1
DLCT6b_112 unknown unknown brain None None unknown None SULF1, MSC-AS1, RP11-467L24.1
DLCT6b_84 unknown unknown brain None None unknown None SLC9C1, POSTN, NPSR1-AS1
DLCT6b_97 unknown unknown brain None None unknown None GUCA1C, RP11-238K6.2
DLCT6b_98 unknown unknown brain None None unknown None CDH24, IL15, ERG
DLCT6b_99 unknown unknown brain None None unknown None DPP4, RP11-467L24.1, FAM160A1
DLIT_136 unknown unknown brain None None unknown None RP11-404H1.1, RP11-114G22.1
DLIT_137 unknown unknown brain None None unknown None LINC02196, AC005150.1, CTD-2195H9.1
DLIT_139 unknown unknown brain None None unknown None RP11-79E3.2, AC005150.1
DLIT_140 unknown unknown brain None None unknown None LINC02263, RP11-79E3.2, RP11-320L2.1, CTB-57H20.1
DLIT_141 unknown unknown brain None None unknown None RORB, NPNT, RP11-511B7.2, RP11-320L2.1
DLIT_142 unknown unknown brain None None unknown None THEMIS, CTD-2195H9.1, CTC-535M15.2
DLIT_143 unknown unknown brain None None unknown None LINC01821, CMTM8, AC005150.1
DLIT_144 unknown unknown brain None None unknown None LINC02263, AC005150.1, RP11-320L2.1, RP11-537P24.1
DLIT_145 unknown unknown brain None None unknown None ALKAL2, LINC02237, AJ006998.2
DLIT_146 unknown unknown brain None None unknown None FBXL21P, ADAMTS16, CBLN2, SNTG2
DLIT_147 unknown unknown brain None None unknown None CCN4, RP4-809F18.1
DLIT_148 unknown unknown brain None None unknown None MCUB, POU6F2, ADAMTS3
DLIT_149 unknown unknown brain None None unknown None LINC00343, THEMIS, TESPA1, CTD-2050E21.2, RP11-191L9.4
DLIT_150 unknown unknown brain None None unknown None THEMIS, POSTN, HPSE2
DLIT_151 unknown unknown brain None None unknown None ATP10A, RP11-81F8.1
DLIT_152 unknown unknown brain None None unknown None PLA2G4A, STK32B
DLNP_83 unknown unknown brain None None unknown None RP11-34C15.2
DLNP_85 unknown unknown brain None None unknown None TACR3, SGO1-AS1, FER1L6-AS2
DLNP_86 unknown unknown brain None None unknown None IFNG-AS1, PLPP3, ADRA1A, PTPRT
DLNP_87 unknown unknown brain None None unknown None SLC9C1, NPSR1, COL9A1, RP11-421N8.3
DLNP_88 unknown unknown brain None None unknown None IFNG-AS1, NPSR1, CD36, RP11-421N8.3
DLNP_89 unknown unknown brain None None unknown None NPSR1-AS1, AE000661.37, RP11-66G15.1
DLNP_90 unknown unknown brain None None unknown None IFNG-AS1, AE000661.37, CTB-57H20.1
DLNP_91 unknown unknown brain None None unknown None CD200R1L, TRIM22, CTC-535M15.2, CTC-340A15.2
DLNP_92 unknown unknown brain None None unknown None FSHR, RP11-286O1.1, CTB-57H20.1
DLNP_93 unknown unknown brain None None unknown None IFNG-AS1, ROR1, NXPH2, CTB-57H20.1
DLNP_94 unknown unknown brain None None unknown None CD200R1L, ROBO3, RP11-511B7.2, RP11-421N8.3
DLNP_95 unknown unknown brain None None unknown None MYOCD, FSHR, NPSR1-AS1, RP11-354I13.2
DLNP_96 unknown unknown brain None None unknown None HMGA2, LINC02008
Dendritic Cell unknown unknown lymph node None None unknown None ITGAX, CD40, CD83, HLA-DRA
Dendritic Cell unknown unknown lymph node None None unknown None CD40, CD83, HLA-DRA
Dorsal Excitatory Neuron 1 unknown unknown spinal cord None None unknown None MAFA, MYO10, COL6A2
Dorsal Excitatory Neuron 10 unknown unknown spinal cord None None unknown None SOX5, TAC1, LMO3
Dorsal Excitatory Neuron 11 unknown unknown spinal cord None None unknown None SOX5, NMU, ISM1
Dorsal Excitatory Neuron 12 unknown unknown spinal cord None None unknown None SOX5, NMU, CALCB
Dorsal Excitatory Neuron 2 unknown unknown spinal cord None None unknown None MAFA, CBLN1, NR2F1
Dorsal Excitatory Neuron 3 unknown unknown spinal cord None None unknown None GABRB2, NR2F1, NTS
Dorsal Excitatory Neuron 4 unknown unknown spinal cord None None unknown None MAFA, GABRB2, MAF
Dorsal Excitatory Neuron 5 unknown unknown spinal cord None None unknown None RELN, PDE11A, IQGAP2
Dorsal Excitatory Neuron 6 unknown unknown spinal cord None None unknown None RELN, PDE11A, NMUR2
Dorsal Excitatory Neuron 7 unknown unknown spinal cord None None unknown None TAC1, PDE11A, NMUR2
Dorsal Excitatory Neuron 8 unknown unknown spinal cord None None unknown None SOX5, TAC1, IGF1
Dorsal Excitatory Neuron 9 unknown unknown spinal cord None None unknown None SOX5, TAC1, CARTPT
Dorsal Inhibitory Neuron 1 unknown unknown spinal cord None None unknown None NR2F2, CAPN8, LINC01197
Dorsal Inhibitory Neuron 2 unknown unknown spinal cord None None unknown None PENK, CAPN8, STK32B
Dorsal Inhibitory Neuron 3 unknown unknown spinal cord None None unknown None RORB, P2RY1, CBLN4
Dorsal Inhibitory Neuron 4 unknown unknown spinal cord None None unknown None ADARB2, CDHR3, NFATC1
Dorsal Inhibitory Neuron 5 unknown unknown spinal cord None None unknown None ADARB2, CDHR3, CDH7
Dorsal Inhibitory Neuron 6 unknown unknown spinal cord None None unknown None PDYN, RORB, SULF1
Dorsal Inhibitory Neuron 7 unknown unknown spinal cord None None unknown None PDYN, LEF1, CCK
Dorsal Inhibitory Neuron 8 unknown unknown spinal cord None None unknown None PDYN, RORB, PROX1
Dorsal Inhibitory Neuron 9 unknown unknown spinal cord None None unknown None NPY, SAMD3, HMCN1
EMSN_222 unknown unknown brain None None unknown None PENK, GFRA1, TAC1
EMSN_223 unknown unknown brain None None unknown None CALCRL, GFRA1, TAC1
EMSN_224 unknown unknown brain None None unknown None TACR1, RXFP1, ALK, FOXP2
EMSN_225 unknown unknown brain None None unknown None CASZ1, LINC02137, LAMA3
EMSN_226 unknown unknown brain None None unknown None CXCL14, PTPRQ, EYA2, RXFP1
EMSN_227 unknown unknown brain None None unknown None NPFFR2, XACT, ONECUT2, FAM160A1
EMSN_228 unknown unknown brain None None unknown None NPFFR2, MEIS1, SEMA3C, ADAMTSL1, RP11-154H17.1
EMSN_229 unknown unknown brain None None unknown None CACNG5, PTH2R, MEIS1, TSHZ1, ADAMTSL1
EMSN_230 unknown unknown brain None None unknown None EYA2, RXFP1, HRH3, ADAMTS3
EMSN_231 unknown unknown brain None None unknown None NPFFR2, LMNTD1, RXFP1, PCDH11Y, TLL1, VWC2L
EMSN_232 unknown unknown brain None None unknown None CHRM5, ABCA1, RXFP1
EMSN_233 unknown unknown brain None None unknown None ZNF736P9Y, CADPS2, PCDH11X, AC133680.1
EMSN_234 unknown unknown brain None None unknown None PAX6, NPFFR2, PRLR
EMSN_426 unknown unknown brain None None unknown None MEIS1, TSHZ1, RP11-537P24.1
Effector Chondrocyte unknown unknown knee None None unknown None STC2, CHAD, IGFBP7
Endo L2-5 NOSTRIN SRGN unknown unknown brain None None unknown None CLDN5
Endothelial Cell unknown unknown spinal cord None None unknown None CLDN5
Endothelial Cell of Lymphatic Vessel unknown unknown lymph node None None unknown None ACKR4, CAV1, NUDT4, NT5E
Eomes low Liver NK cell unknown unknown liver None None unknown None TBX21, eomes
Epen_65 unknown unknown brain None None unknown None DTHD1, TNC, FGFR3
Epen_66 unknown unknown brain None None unknown None NTS, AC018717.1
Epen_67 unknown unknown brain None None unknown None ADGRD2, DTHD1, OBI1-AS1
Epen_68 unknown unknown brain None None unknown None CRIP1, CAPS, OR2B4P
Epen_69 unknown unknown brain None None unknown None CAPS, AC018717.1, RP11-624A4.2
Epen_70 unknown unknown brain None None unknown None TRDN, GRAMD2A, OR2B4P
Epen_71 unknown unknown brain None None unknown None SGMS2, DTHD1
Epen_72 unknown unknown brain None None unknown None OR2B4P, MGC4859, RP11-624A4.2
Epen_73 unknown unknown brain None None unknown None RP11-624A4.2, AC018717.1, AC007682.1
Epen_74 unknown unknown brain None None unknown None DTHD1, TTR
Ependymal Cell unknown unknown spinal cord None None unknown None CFAP73
Exc L2 LAMP5 KCNG3 unknown unknown brain None None unknown None FAM163A, LOC101927668, SAMD3
Exc L2 LINC00507 ATP7B unknown unknown brain None None unknown None ACVR1C, LOC105377209
Exc L2 LINC00507 GLRA3 unknown unknown brain None None unknown None LINC01378, LOC101928278, SERPINE2
Exc L2-3 LINC00507 DSG3 unknown unknown brain None None unknown None BDNF, BMPR1B, LOC105379003
Exc L2-3 RORB CCDC68 unknown unknown brain None None unknown None COBLL1, COL5A2, PRSS12
Exc L2-3 RORB PTPN3 unknown unknown brain None None unknown None COL5A2, LOC105370610, LOC105378334, RORB
Exc L2-3 RORB RTKN2 unknown unknown brain None None unknown None LOC101927745, LOC105376987, PLCH1, RMST
Exc L3 LAMP5 CARM1P1 unknown unknown brain None None unknown None EPB41L4A, SV2C, SYT2
Exc L3 RORB OTOGL unknown unknown brain None None unknown None COL22A1, RMST
Exc L3 THEMIS ENPEP unknown unknown brain None None unknown None FAP, LAMA2, LOC101928964, LOC105376081
Exc L3-5 FEZF2 ASGR2 unknown unknown brain None None unknown None LOC105376457, OR51E2
Exc L3-5 FEZF2 LINC01107 unknown unknown brain None None unknown None BTNL9, EDNRB
Exc L3-5 RORB LAMA4 unknown unknown brain None None unknown None KCNH8, LOC100128497, LOC101927281, LOC105376081, TRP
Exc L3-5 RORB LINC01202 unknown unknown brain None None unknown None LOC101927874, LOC105374971, LOC105376081, LOC105377703
Exc L3-5 RORB LNX2 unknown unknown brain None None unknown None LOC105374971, LOC105377703, TRABD2A
Exc L3-5 RORB RPRM unknown unknown brain None None unknown None LOC105374971, LOC105374973, RPRM
Exc L3-5 RORB TNNT2 unknown unknown brain None None unknown None FSHR, LOC100507562, LOC105376081
Exc L5 FEZF2 CSN1S1 unknown unknown brain None None unknown None LOC105373592, OPN4, VAT1L
Exc L5 FEZF2 NREP-AS1 unknown unknown brain None None unknown None ADAMTS12, CD36, LOC105370315
Exc L5 FEZF2 PKD2L1 unknown unknown brain None None unknown None NPSR1-AS1, VGLL3
Exc L5 FEZF2 RNF144A-AS1 unknown unknown brain None None unknown None CD36, LOC105369818, LOC105370019
Exc L5 RORB MED8 unknown unknown brain None None unknown None COL22A1, LOC401134, NPFFR2
Exc L5 THEMIS FGF10 unknown unknown brain None None unknown None BDNF, CRH, NPFFR2
Exc L5 THEMIS LINC01116 unknown unknown brain None None unknown None LOC105369890, LOC105371663
Exc L5 THEMIS RGPD6 unknown unknown brain None None unknown None DDR2, LOC105371663, THEMIS
Exc L5 THEMIS SLC22A18 unknown unknown brain None None unknown None BTNL9, CCBE1, LOC401134, SLC7A11
Exc L5 THEMIS VILL unknown unknown brain None None unknown None DACH1, LOC101927389, TNC
Exc L5-6 FEZF2 C9orf135-AS1 unknown unknown brain None None unknown None EGFEM1P, FOXP2, SEMA5A
Exc L5-6 FEZF2 CFTR unknown unknown brain None None unknown None LOC105374392, NR4A2, SEMA3D
Exc L5-6 FEZF2 FILIP1L unknown unknown brain None None unknown None LOC100128497, MCTP2, SEC16B, SULF1
Exc L5-6 FEZF2 IFNG-AS1 unknown unknown brain None None unknown None LOC105369818, NPSR1-AS1
Exc L5-6 FEZF2 LPO unknown unknown brain None None unknown None LOC101928114, LOC105376372
Exc L5-6 FEZF2 OR1L8 unknown unknown brain None None unknown None LGR6, LOC101927439, LOC105374392, LOC105377183
Exc L5-6 FEZF2 SH2D1B unknown unknown brain None None unknown None ADAMTSL1, MEIS2, NLGN4Y, PAPSS2
Exc L5-6 THEMIS SMYD1 (L6 IT Car3) unknown unknown brain None None unknown None ATP10A, TRPC5
Exc L5-6 THEMIS TNFAIP6 unknown unknown brain None None unknown None LOC105373893, LOC105378031, LTBP1, TSHZ2
Exc L6 FEZF2 FFAR4 unknown unknown brain None None unknown None FER1L6-AS2, LOC105378486
Exc L6 FEZF2 KLK7 unknown unknown brain None None unknown None LOC101927439, MDFIC
Exc L6 FEZF2 PDYN unknown unknown brain None None unknown None GBP2, PDYN
Exc L6 FEZF2 POGK unknown unknown brain None None unknown None ADD3-AS1, LOC100132891, PCOLCE2
Exc L6 FEZF2 PROKR2 unknown unknown brain None None unknown None LOC105371310, SLITRK6
Exc L6 THEMIS LINC00343 unknown unknown brain None None unknown None ANKRD30B, LINC00299, LINC00343
Exc L6 THEMIS SLN unknown unknown brain None None unknown None FAM163A, LOC105371832, LOC105374524
Exc L6 THEMIS SNTG2 unknown unknown brain None None unknown None LOC101927389, LOC105371310
Fbl_24 unknown unknown brain None None unknown None C7, BMP5
Fbl_25 unknown unknown brain None None unknown None LTBP2, TBX18
Fbl_26 unknown unknown brain None None unknown None SLC6A20, COL15A1
Fbl_27 unknown unknown brain None None unknown None FMO2, LINC02147, ABCA8
Fbl_28 unknown unknown brain None None unknown None C7, FBLN2, COL1A2
Fbl_29 unknown unknown brain None None unknown None SLC2A1, EBF2, BMPR1B
Fbl_30 unknown unknown brain None None unknown None SLC5A5, RP11-354K4.2
Fbl_31 unknown unknown brain None None unknown None PTGDR, BNC2
Fibrocartilage Chondrocyte 1 unknown unknown knee None None unknown None MSMP, COL3A1, COL1A2
Fibrocartilage Chondrocyte 2 unknown unknown knee None None unknown None IGFBP5, PRG4, CTHRC1
Follicular Dendritic Cell unknown unknown lymph node None None unknown None CR2, CXCL13, FCGRB, MADCAM1, MFGE8, VCAM1
Follicular Dendritic Cell unknown unknown lymph node None None unknown None CR2, CXCL13, FCER2A, FCGRB, MADCAM1, MFGE8, VCAM1
Gamma/Delta T cells unknown unknown lymph node None None unknown None CD3D, TRDC, ID2, KLRD1
Homeostatic Chodrocyte unknown unknown knee None None unknown None MMP3, CCL2, RCAN1
Hypertrophic Chondrocyte unknown unknown knee None None unknown None IBSP, SPP1, COL10A1
ILF lymphatic endothelium unknown unknown large intestine None None unknown None LYVE-1
ILV high endothelial venule endothelium unknown unknown large intestine None None unknown None MADCAM1
Inh L1 LAMP5 BMP2 unknown unknown brain None None unknown None COL5A2, FREM1
Inh L1 LAMP5 NMBR unknown unknown brain None None unknown None PCDH18, RELN
Inh L1 LAMP5 PVRL2 unknown unknown brain None None unknown None CBLN4, HS3ST5, RELN, TRPC3
Inh L1 LAMP5 RAB11FIP1 unknown unknown brain None None unknown None ADAMTS20, FREM1, MYH11
Inh L1 PAX6 CHRFAM7A unknown unknown brain None None unknown None CHRNA7, CNR1, LINC01539
Inh L1 PAX6 MIR101-1 unknown unknown brain None None unknown None RELN, TGFBR2
Inh L1 PVALB SST ASIC4 unknown unknown brain None None unknown None ADAM33, NCKAP5, PRELID2
Inh L1 SST DEFB108B unknown unknown brain None None unknown None NDST4, SYT10
Inh L1 SST P4HA3 unknown unknown brain None None unknown None ARHGAP42, FOXO1, ST8SIA6
Inh L1 VIP KLHDC8B unknown unknown brain None None unknown None ITGBL1, SLITRK4
Inh L1-2 PVALB CDK20 unknown unknown brain None None unknown None ADAMTS12, SYT10, TMEM132C
Inh L1-2 SST CCNJL unknown unknown brain None None unknown None CALB1, SPHKAP, TMEM132C
Inh L1-2 SST CLIC6 unknown unknown brain None None unknown None ARHGAP42, NEDD4, TAC1
Inh L1-2 SST PRRT4 unknown unknown brain None None unknown None LOC101927843, LOC101929028
Inh L1-2 VIP EXPH5 unknown unknown brain None None unknown None SCTR, ST18
Inh L1-2 VIP HTR3A unknown unknown brain None None unknown None HTR3A, LOC105373642
Inh L1-2 VIP PTGER3 unknown unknown brain None None unknown None KCNH8, PARD3B, SYT10
Inh L1-2 VIP SCML4 unknown unknown brain None None unknown None ABI3BP, KCNH8, LOC100506497
Inh L1-2 VIP WNT4 unknown unknown brain None None unknown None LOC105379064, SYT9
Inh L1-3 SST FAM20A unknown unknown brain None None unknown None PCSK5, TAC1
Inh L1-3 VIP CBLN1 unknown unknown brain None None unknown None HTR2C, LOC284825, TAC3
Inh L1-3 VIP CHRNA2 unknown unknown brain None None unknown None EYA4, LOC105373642, PPP1R1C
Inh L1-3 VIP FNDC1 unknown unknown brain None None unknown None KCNH8, LOC101927286, LOC101928842
Inh L1-3 VIP HSPB6 unknown unknown brain None None unknown None CCNG2, IGFBP5
Inh L1-5 VIP CD27-AS1 unknown unknown brain None None unknown None ANKFN1, EGFEM1P, IQGAP2
Inh L1-5 VIP LINC01013 unknown unknown brain None None unknown None DACH2, SRGAP1, THSD7B
Inh L1-5 VIP PHLDB3 unknown unknown brain None None unknown None EGF, THSD7B
Inh L1-5 VIP SMOC1 unknown unknown brain None None unknown None ANGPT1, SMOC1, VIP
Inh L1-6 LAMP5 AARD unknown unknown brain None None unknown None FBXL7, FREM1, KIT, PRELID2
Inh L1-6 LAMP5 CA1 unknown unknown brain None None unknown None HS3ST4, NOS1
Inh L1-6 LAMP5 NES unknown unknown brain None None unknown None EPHA3, EYA4, KIT, NTNG1, RO
Inh L1-6 PVALB COL15A1 (Chandelier) unknown unknown brain None None unknown None COL15A1, NPNT
Inh L1-6 SST NPY (Sst Chodl) unknown unknown brain None None unknown None NPY
Inh L1-6 VIP SLC7A6OS unknown unknown brain None None unknown None CNR1, PBX3
Inh L2 PAX6 FREM2 unknown unknown brain None None unknown None CILP2, IGFBP7
Inh L2 PVALB FRZB unknown unknown brain None None unknown None CBLN4, RGS5, SLC9A9
Inh L2 VIP SLC6A16 unknown unknown brain None None unknown None KCNT2, LOC105370456
Inh L2-3 SST NMU unknown unknown brain None None unknown None HPSE2, NOS1, PIEZO2
Inh L2-5 PVALB HHIPL1 unknown unknown brain None None unknown None ADAMTS17, ADAMTS20, MDFIC
Inh L2-5 PVALB RPH3AL unknown unknown brain None None unknown None ARHGAP42, MYO5B, POSTN, WIF1
Inh L2-5 VIP BSPRY unknown unknown brain None None unknown None LOC101927078, PDE3A, ST18
Inh L2-5 VIP SOX11 unknown unknown brain None None unknown None ADAMTSL1, HTR2C, THSD7B
Inh L3 PVALB SAMD13 unknown unknown brain None None unknown None LOC101928964, SULF1
Inh L3-5 PVALB ISG20 unknown unknown brain None None unknown None LOC101926942, LOC105377862, SV2C
Inh L3-5 SST CDH3 unknown unknown brain None None unknown None FREM1, NPNT, QRFPR
Inh L3-5 SST GGTLC3 unknown unknown brain None None unknown None EYS, RELN
Inh L3-5 SST OR5AH1P unknown unknown brain None None unknown None ADAMTS5, FBXL7, SST
Inh L3-5 VIP HS3ST3A1 unknown unknown brain None None unknown None ABI3BP, IQGAP2, SLC22A3
Inh L3-5 VIP IGDCC3 unknown unknown brain None None unknown None EREG, NOX4
Inh L3-5 VIP TAC3 unknown unknown brain None None unknown None COL19A1, SOX2-OT, TSHZ2
Inh L3-6 PAX6 LINC01497 unknown unknown brain None None unknown None PALMD, RELN
Inh L3-6 VIP UG0898H09 unknown unknown brain None None unknown None GALNT10, LINC01411, LOC105373454
Inh L3-6 VIP ZIM2-AS1 unknown unknown brain None None unknown None CXCL14, PENK
Inh L5 PVALB LRIG3 unknown unknown brain None None unknown None CDH6, GPC5, PLCE1
Inh L5 SST RPL35AP11 unknown unknown brain None None unknown None EDNRA, FREM1, TRHDE
Inh L5-6 LAMP5 CRABP1 unknown unknown brain None None unknown None LOC105379168, PDGFD
Inh L5-6 PVALB FAM150B unknown unknown brain None None unknown None ALKAL2, MYBPC1, TNC
Inh L5-6 PVALB GAPDHP60 unknown unknown brain None None unknown None GPC5, MYBPC1, SEMA3C
Inh L5-6 PVALB KCNIP2 unknown unknown brain None None unknown None GPC5, NPFFR2, VAV3
Inh L5-6 PVALB MEPE unknown unknown brain None None unknown None MEPE, MYBPC1, SVIL
Inh L5-6 PVALB SST CRHR2 unknown unknown brain None None unknown None HPGD, RGS5, SPON1
Inh L5-6 PVALB ZFPM2-AS1 unknown unknown brain None None unknown None PCDH15, SEMA6D, ZFPM2-AS1
Inh L5-6 SST BEAN1 unknown unknown brain None None unknown None ADAMTSL1, SEMA5A, THSD7B, TRHDE
Inh L5-6 SST C4orf26 unknown unknown brain None None unknown None ADAMTS20, PENK, SPON1
Inh L5-6 SST DNAJC14 unknown unknown brain None None unknown None HGF, ITGA1, STON2
Inh L5-6 SST FBN2 unknown unknown brain None None unknown None HCRTR2, KLHL1
Inh L5-6 SST ISX unknown unknown brain None None unknown None COL19A1, TRPM3
Inh L5-6 SST KLHL1 unknown unknown brain None None unknown None KLHL14, NDST4, SLC17A8
Inh L5-6 SST PAWR unknown unknown brain None None unknown None EPB41L4A, NDST4, TRHDE
Inh L5-6 SST PIK3CD unknown unknown brain None None unknown None KLHL14, LOC100996671
Inh L5-6 VIP COL4A3 unknown unknown brain None None unknown None ABI3BP, KCTD12, PARD3B
Inh L6 SST TH unknown unknown brain None None unknown None LOC100128108, TH
Interstitial macrophage unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, SIGLEC1, MRC1, CD163, STAB1, ITGAM, IGSF21, FOLR2
L5ET_113 unknown unknown brain None None unknown None LINC02424, LINC00943
L5ET_114 unknown unknown brain None None unknown None LINC00326, RP11-370K2.1, CTB-57H20.1
L5ET_115 unknown unknown brain None None unknown None XIST, CSN1S1
L5ET_117 unknown unknown brain None None unknown None GABRQ, LRP2, RP11-622O11.6
L5ET_118 unknown unknown brain None None unknown None CSN1S1, LRP2, RP4-678D15.1
LLC_264 unknown unknown brain None None unknown None COL15A1, CRH, RP11-238K6.2
LLC_265 unknown unknown brain None None unknown None PTHLH, RP11-238K6.2
LLC_266 unknown unknown brain None None unknown None C1QL1, UNC5B, GRIN2C
LLC_267 unknown unknown brain None None unknown None DDR2, MET, CHST9
LLC_268 unknown unknown brain None None unknown None TACR1, EYA4, CHST9, CMTM8
LLC_269 unknown unknown brain None None unknown None IFI44, ISM1, CHST9
LLC_270 unknown unknown brain None None unknown None NOS1, TAC1, ADAMTS9-AS2, PREX2, ARHGAP6
LLC_271 unknown unknown brain None None unknown None ADGRG6, SFRP1, RP11-563D10.1
LLC_272 unknown unknown brain None None unknown None FREM2, SFRP1, PDGFD, LAMP5
LLC_273 unknown unknown brain None None unknown None LRP2, FBN2, CHST9, RP11-563D10.1
LLC_274 unknown unknown brain None None unknown None NFIA-AS2, FBN2, CTC-806A22.1
LLC_275 unknown unknown brain None None unknown None SFRP1, PDGFD, CA2, CXCL14
LRL_315 unknown unknown brain None None unknown None TENT5A, MME, SMOC1
LRL_316 unknown unknown brain None None unknown None ADAMTS20, EYA2, BTNL9
LRL_317 unknown unknown brain None None unknown None BMP5, LINC00836, RP11-46H14.1, RP11-321P16.3
LRL_318 unknown unknown brain None None unknown None LINC00836, CTXN3, RP11-46H14.1
LRL_319 unknown unknown brain None None unknown None LINC00355, FAM114A1
LRL_320 unknown unknown brain None None unknown None TINAG, SYT10, THSD7B
LRL_321 unknown unknown brain None None unknown None ADGRL4, VEPH1, LINC01798, RP11-649A16.1
LRL_322 unknown unknown brain None None unknown None LINC01982, SLC5A7
Lymphatic Endothelial Cell unknown unknown lymph node None None unknown None CD209, CLEC4G, CLEC4M, LYVE1, MARCO
Lymphatic Endothelial Cell unknown unknown lymph node None None unknown None ACKR4, CAV1, NUDT4, NT5E
Lymphatic Endothelial Cell -Subcapsular Sinus Ceiling unknown unknown lymph node None None unknown None ACKR4, CAV1, NUDT4, NT5E
Lymphatic Endothelial Cell of Medulla Ceiling unknown unknown lymph node None None unknown None ACKR4, LYVE1, MFAP4, NT5E
Lymphatic Endothelial Cell-Subcapsular Sinus Floor unknown unknown lymph node None None unknown None CCL20, CXCL1, CXCL5, DARC, LYZ, MARCO, TNFRSF9, THY1
Lymphatic Endothelial Cell-Trabeculae unknown unknown lymph node None None unknown None ACKR4, LYVE1, MFAP4, NT5E
MGE_236 unknown unknown brain None None unknown None PRTG, MYO5B, TAC1
MGE_239 unknown unknown brain None None unknown None PIEZO2, HPSE2, RP11-656G20.1
MGE_240 unknown unknown brain None None unknown None FBN2, TAFA4, SYT10, RP11-656G20.1
MGE_241 unknown unknown brain None None unknown None BMP6, SOX6, ANKRD30B, RP11-656G20.1
MGE_242 unknown unknown brain None None unknown None MCUB, FBN2, MME, SOX6, ADAMTSL1
MGE_243 unknown unknown brain None None unknown None PENK, CALB1, EYA4, CTD-2533K21.4
MGE_244 unknown unknown brain None None unknown None NPY, TAC3, CBLN4
MGE_245 unknown unknown brain None None unknown None NPY, FBN2, RP11-656G20.1
MGE_246 unknown unknown brain None None unknown None SST, LINC02008, MAF
MGE_247 unknown unknown brain None None unknown None LPAR1, COL5A2, CTD-2288O8.3
MGE_248 unknown unknown brain None None unknown None DCN, TAC1, RP11-799O21.2
MGE_249 unknown unknown brain None None unknown None TRPC7, SST, RSPO3, SOX6, SEMA3A
MGE_250 unknown unknown brain None None unknown None PROM1, ADGRG6, ADAMTS9-AS2
MGE_251 unknown unknown brain None None unknown None SST, ADGRG6, RELN, RP11-387P12.1
MGE_252 unknown unknown brain None None unknown None EDNRA, TAC3, ABC10-43608400O15.1
MGE_253 unknown unknown brain None None unknown None SST, VCAN, TRPC6, CTC-535M15.2, CTC-340A15.2
MGE_254 unknown unknown brain None None unknown None ADAMTS20, NPAS1, FBN2
MGE_255 unknown unknown brain None None unknown None HGF, BCHE, RP11-238K6.2
MGE_256 unknown unknown brain None None unknown None MYBPC1, SHISA8, ADAMTS17
MGE_257 unknown unknown brain None None unknown None MEPE, RGS5_ENSG00000143248
MGE_258 unknown unknown brain None None unknown None WNT16, SST, PAWR
MGE_259 unknown unknown brain None None unknown None ANOS1, RGS5_ENSG00000143248, BTBD11
MGE_260 unknown unknown brain None None unknown None IQGAP2, TAFA4, CTXND1
MGE_261 unknown unknown brain None None unknown None ADAMTS17, PVALB, CEMIP, AC133680.1
MGE_262 unknown unknown brain None None unknown None PIEZO2, SULF1, ADAMTS9-AS2, RP1-35C21.2
MGE_263 unknown unknown brain None None unknown None SULF1, PVALB, AC133680.1, RP11-875G18.1
MSN_206 unknown unknown brain None None unknown None GLI3, EBF1, AC002066.1, RP11-640F22.1
MSN_207 unknown unknown brain None None unknown None DRD2, MME, LINC01378
MSN_208 unknown unknown brain None None unknown None PENK, SH3RF2, RP1-71H24.1
MSN_209 unknown unknown brain None None unknown None LINC02137, SH3RF2, DRD1, RP11-358P11.1
MSN_210 unknown unknown brain None None unknown None LINC02137, LINC02822, RP11-286O1.1
MSN_211 unknown unknown brain None None unknown None DRD1, PTPRQ, RP11-640F22.1
MSN_212 unknown unknown brain None None unknown None PENK, RP11-358P11.1, RP5-1180C18.1
MSN_213 unknown unknown brain None None unknown None LINC00534, PENK
MSN_214 unknown unknown brain None None unknown None DRD1, LINC01117, STAC
MSN_215 unknown unknown brain None None unknown None DRD1, RP11-829H16.3, RP11-875G18.1
MSN_216 unknown unknown brain None None unknown None DRD2, PENK, EYA2, RP11-97F8.2, CTC-340A15.2
MSN_217 unknown unknown brain None None unknown None DCDC2C, PENK
MSN_218 unknown unknown brain None None unknown None DRD3, MME, RP11-142I20.2
MSN_219 unknown unknown brain None None unknown None ISL1, CXCL14, FOXP2
MSN_220 unknown unknown brain None None unknown None ISL1, MKX, PCSK6
MSN_221 unknown unknown brain None None unknown None DRD2, RP11-111G13.1, CTC-535M15.2
MSN_427 unknown unknown brain None None unknown None ISL1, GABRG1, CTC-552D5.1
MSN_430 unknown unknown brain None None unknown None PENK, GABRG1
Macrophage unknown unknown lymph node None None unknown None CD4, CD14, HLA-DRA, ITGAX
Marginal Reticular Cell unknown unknown lymph node None None unknown None CXCL13, ENPP2, TNFSF11
Mast Cell unknown unknown lymph node None None unknown None KIT, MS4A2, TPSAB1, TPSB2
Mast Cell unknown unknown lymph node None None unknown None KIT, TPSB2, TPSAB1, MS4A2
Medial Excitatory Neuron 1 unknown unknown spinal cord None None unknown None ZFHX3, TAC1, LMX1B
Medial Excitatory Neuron 2 unknown unknown spinal cord None None unknown None NFIX, SATB2, TAC3
Medial Excitatory Neuron 3 unknown unknown spinal cord None None unknown None NFIX, PRDM8, CDH23
Medial Excitatory Neuron 4 unknown unknown spinal cord None None unknown None ZFHX3, ISL1
Medial Inhibitory Neuron 1 unknown unknown spinal cord None None unknown None GAD2, TFAP2B
Medullary Reticular Cell unknown unknown lymph node None None unknown None CXCL12, TNFSF11
Megakaryocyte unknown unknown Bone marrow None None unknown None GP9, CAVIN2, PPBP, LAT, PF4, CLEC1B, ITGA2B
Memory B Cell unknown unknown lymph node None None unknown None CD19, MS4A1, HLA-DRA
Memory CD4+ T cell unknown unknown lymph node None None unknown None CD3D, CXCR6, ITGA1
Memory CD8+ T cell unknown unknown lymph node None None unknown None CD3D, CD8A, CXCR6, ITGA1
Merkel unknown unknown large intestine None None unknown None keratin 20, chromogranin A, synaptophysin
Mgl_10 unknown unknown brain None None unknown None LNCAROD, P2RY12, DOCK8
Mgl_11 unknown unknown brain None None unknown None LINC02642, LINC02712, P2RY12
Mgl_12 unknown unknown brain None None unknown None MRC1, F13A1
Mgl_4 unknown unknown brain None None unknown None HIF1A-AS3, SRGN
Mgl_5 unknown unknown brain None None unknown None APBB1IP, TTR
Mgl_6 unknown unknown brain None None unknown None ITGAX, SCIN, LINC00278
Mgl_7 unknown unknown brain None None unknown None OLR1, CX3CR1, LINC02712
Mgl_8 unknown unknown brain None None unknown None CCDC26, LNCAROD, CX3CR1
Mgl_9 unknown unknown brain None None unknown None AIF1, CX3CR1, LINC02712
Micro L1-6 TYROBP CD74 unknown unknown brain None None unknown None APBB1IP, P2RY12
Microglia unknown unknown spinal cord None None unknown None AIF1
Midi_433 unknown unknown brain None None unknown None OTX2-AS1, PRSS12, HHIP, RELN
Midi_434 unknown unknown brain None None unknown None CTXN3, NPPC, NPSR1-AS1
Midi_435 unknown unknown brain None None unknown None NPSR1, TRPC7, LTBP1, NR2F2-AS1
Midi_436 unknown unknown brain None None unknown None HMCN1, OTX2-AS1, BMPR1B
Midi_437 unknown unknown brain None None unknown None OTX2-AS1, BMPR1B, RORB, CH17-174L20.1
Midi_438 unknown unknown brain None None unknown None NPSR1, NPPC, AC010091.1
Midi_439 unknown unknown brain None None unknown None OTX2-AS1, LINC02055, PRSS12, SEMA3C
Midi_440 unknown unknown brain None None unknown None MYO3B, OTX2-AS1, LINC02055
Midi_441 unknown unknown brain None None unknown None MYO3B, PLEKHH2, CRNDE
Midi_442 unknown unknown brain None None unknown None TSPAN12, CASR, NPSR1
Midi_443 unknown unknown brain None None unknown None VASH2, NPPC, LINC02552, OTX2-AS1
Midi_444 unknown unknown brain None None unknown None PLEKHH2, OTX2-AS1, LINC02552, SEMA3C, SYT2
Misc_116 unknown unknown brain None None unknown None ERG, PCSK6, ATP10A, FAM160A1
Misc_132 unknown unknown brain None None unknown None CD53, ETS1, RORB
Misc_164 unknown unknown brain None None unknown None LINC01482, LINC02653, LINC01885, RP11-369E15.3
Misc_165 unknown unknown brain None None unknown None LINC02752, RP11-60A8.1
Misc_166 unknown unknown brain None None unknown None C10orf90, RP11-537P24.1
Misc_167 unknown unknown brain None None unknown None ANO2, TRPC6, TSHZ2, RP4-678D15.1
Misc_168 unknown unknown brain None None unknown None SCHLAP1, DCN
Misc_170 unknown unknown brain None None unknown None DCN, GRB14
Misc_176 unknown unknown brain None None unknown None CARM1P1, FREM2, COBLL1, RP11-719N9.1
Misc_177 unknown unknown brain None None unknown None VIPR2, CALCRL, COBLL1, RP11-719N9.1, CTC-535M15.2
Misc_178 unknown unknown brain None None unknown None RP11-370B11.4, RP11-719N9.1, CTC-535M15.2, CTC-340A15.2
Misc_314 unknown unknown brain None None unknown None PCP2
Misc_401 unknown unknown brain None None unknown None SOX11, CCBE1, NR2F2-AS1
Misc_404 unknown unknown brain None None unknown None LINC02306, LINC02263, AC011288.2
Mmb_323 unknown unknown brain None None unknown None TAC1, RP11-284G10.1, RP3-401D24.1
Mmb_324 unknown unknown brain None None unknown None LINC00410, RBMS3-AS2, TAC1
Mmb_325 unknown unknown brain None None unknown None FSHR, LINC00410, RP11-460M2.1, RP3-401D24.1
Mmb_326 unknown unknown brain None None unknown None SIM1, PITX2, CRHBP, RP3-401D24.1
Mmb_327 unknown unknown brain None None unknown None LINC00410, TAFA4, RP3-401D24.1
Mmb_328 unknown unknown brain None None unknown None LINC00410, CFAP299
Mmb_329 unknown unknown brain None None unknown None SIM1, LINC02196, PRLR, FBXL7
Mmb_330 unknown unknown brain None None unknown None PITX2, NTNG1, RP3-401D24.1
Mmb_331 unknown unknown brain None None unknown None PITX2, SEMA3C, RP11-115D10.1
Mmb_332 unknown unknown brain None None unknown None SIM1, FRMPD2, ONECUT2, MYO1B
Mmb_333 unknown unknown brain None None unknown None SIM1, CD36, LTBP1
Mono_3 unknown unknown brain None None unknown None FCN1
Monocyte Derived Cell unknown unknown kidney None None unknown None MSR1, ITGAX, HLA-DQA1, HLA-DRB1, CSF2RA, CD14, TRPM2
Monocytoid B Cell unknown unknown lymph node None None unknown None AICDA, CD19, IGHM
Myeloid progenitor unknown unknown Bone marrow None None unknown None SPI1, IRF8, CEBPB, KLF4
Myofibroblast unknown unknown lymph node None None unknown None ACTA2, COL1A1, COL3A1
NK CD56bright unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, IL7R, SPTSSB, XCL1, XCL2, CD56
NK cell unknown unknown large intestine None None unknown None CD56, CD57, CD11c, NKG2D
Naive B Cell unknown unknown lymph node None None unknown None CD19, MS4A1, IGHD, FCER2, HLA-DRA, SELL
Naive CD4+ T cell unknown unknown lymph node None None unknown None CD3D, CCR7, SELL
Naive CD8+ T cell unknown unknown lymph node None None unknown None CD3D, CD8A, CCR7, SELL
Natural Killer Cell unknown unknown lymph node None None unknown None ID2, KLRD1
Nkcell_2 unknown unknown brain None None unknown None GNLY, NKG7
OPC L1-6 PDGFRA COL20A1 unknown unknown brain None None unknown None FAM222A, KIF25, TGFA
OPC_32 unknown unknown brain None None unknown None MROH9, RP1-45C12.1
OPC_33 unknown unknown brain None None unknown None OLIG1, APOD, RP1-45C12.1
OPC_34 unknown unknown brain None None unknown None OLIG1, RP4-668E10.4, RP11-197H3.1
OPC_35 unknown unknown brain None None unknown None OLIG1, MIR3681HG, RP4-668E10.4
OPC_36 unknown unknown brain None None unknown None LINC01608, RP4-668E10.4
Oligo L2-6 OPALIN FTH1P3 unknown unknown brain None None unknown None STK32A, VCAN
Oligo L2-6 OPALIN MAP6D1 unknown unknown brain None None unknown None ENPP2, LOC101927459
Oligo L3-6 OPALIN ENPP6 unknown unknown brain None None unknown None ENPP2, LINC01378, MBP, ST18
Oligo L5-6 OPALIN LDLRAP1 unknown unknown brain None None unknown None LOC105376917, OPALIN, OBI1-AS1
Oligo_40 unknown unknown brain None None unknown None OPALIN, PLP1, ERBB4
Oligo_44 unknown unknown brain None None unknown None SLC5A11, ANLN, CARNS1, TF, MOBP
Oligo_45 unknown unknown brain None None unknown None SLC5A11, OPALIN, MOBP, CERCAM
Oligo_46 unknown unknown brain None None unknown None LINC01608, RNASE1, CNDP1
Oligo_47 unknown unknown brain None None unknown None OPALIN, LINC01608, PLP1
Oligo_48 unknown unknown brain None None unknown None OPALIN, RP11-38B6.1
Oligo_49 unknown unknown brain None None unknown None SLC5A11, CARNS1, TF, CRYAB, AC084149.2
Oligo_50 unknown unknown brain None None unknown None PTCSC3, SLC5A11
Oligodendrocyte unknown unknown spinal cord None None unknown None MOG
Oligodendrocyte Precursor Cell unknown unknown spinal cord None None unknown None BEST3
Paneth unknown unknown large intestine None None unknown None DEFA5
Paneth unknown unknown large intestine None None unknown None defensin alpha 5
Paneth cell unknown unknown Small Intestine None None unknown None LYZ, DEFA5
Per_21 unknown unknown brain None None unknown None NDUFA4L2, RERGL
Per_22 unknown unknown brain None None unknown None CARMN, SLC19A1
Per_23 unknown unknown brain None None unknown None ASPN, SLC6A12, SLC6A13
Pericyte unknown unknown lymph node None None unknown None PDGFRalpha+, PDGFRbeta+
Plasma Cell unknown unknown lymph node None None unknown None CD38, IRF4, PRDM1, SDC1
Plasmablast unknown unknown lymph node None None unknown None CD38, IRF4, PRDM1, SDC1
Plasmacytoid Dendritic Cell unknown unknown Bone marrow None None unknown None GZMB, JCHAIN, SERPINF1
Plasmacytoid Dendritic Cell unknown unknown lymph node None None unknown None IL3RA, CLEC4C, GZMB, IGJ
Plasmacytoid Dendritic Cell (pDC) unknown unknown Blood None None unknown None GZMB, JCHAIN, SERPINF1
Prefibrocartilage Chondrocyte unknown unknown knee None None unknown None PRG4, COL2A1, CTHRC1
Prehypertrophic Chondrocyte unknown unknown knee None None unknown None FST, C11orf96, INHBA
Regulatory Chondrocyte 1 unknown unknown knee None None unknown None ANGPTL4, CHI3L1, CHI3L2
Regulatory Chondrocyte 2 unknown unknown knee None None unknown None MT1G, MT1E, MT1H
Reparative Chondrocyte unknown unknown knee None None unknown None CILP, LOX, ACAN
SOX9+ epithelial cell unknown unknown Uterus None None unknown None EPCAM, SOX9, MMP7
Smooth Muscle Cell unknown unknown lymph node None None unknown None ACTA2
Splat_235 unknown unknown brain None None unknown None NPY, NOS1
Splat_237 unknown unknown brain None None unknown None BCHE, PDGFD, CMTM8
Splat_238 unknown unknown brain None None unknown None ST18, IL1RAPL2
Splat_313 unknown unknown brain None None unknown None LINC02770, RP11-410K21.2
Splat_334 unknown unknown brain None None unknown None GNG8, POU4F1
Splat_335 unknown unknown brain None None unknown None HSPD1P8, AC003099.2
Splat_336 unknown unknown brain None None unknown None FAM83B, ONECUT1
Splat_337 unknown unknown brain None None unknown None ONECUT1, C5orf64, TAFA4
Splat_338 unknown unknown brain None None unknown None HOXD3, FSHR, RP11-354K4.2
Splat_339 unknown unknown brain None None unknown None SLC6A5, LINC01798, MEIS1
Splat_340 unknown unknown brain None None unknown None ONECUT1, LHX9, LINC01798
Splat_341 unknown unknown brain None None unknown None LINC01036, EBF2, EBF3
Splat_342 unknown unknown brain None None unknown None LINC01036, LINC02306
Splat_343 unknown unknown brain None None unknown None CASZ1, EBF2, HOXB3
Splat_344 unknown unknown brain None None unknown None EBF3, DOCK8, AC067959.1
Splat_345 unknown unknown brain None None unknown None LMX1B, HOXB3, RP11-221G19.1
Splat_346 unknown unknown brain None None unknown None ITGA11, LMX1B
Splat_347 unknown unknown brain None None unknown None PAX2, HOXB3, EBF3
Splat_348 unknown unknown brain None None unknown None HOXD3, SALL3
Splat_349 unknown unknown brain None None unknown None HOXD3, TSPAN18, AC079135.1
Splat_350 unknown unknown brain None None unknown None SLC6A5, TTR, ADAMTSL1, HTR2C
Splat_351 unknown unknown brain None None unknown None LINC00261, OTX2-AS1
Splat_352 unknown unknown brain None None unknown None LINC01210, LHX1, EBF3, GATA3
Splat_353 unknown unknown brain None None unknown None HPGD, GATA3, CTC-535M15.2
Splat_354 unknown unknown brain None None unknown None LHX1, TCF7L2, RP11-66G15.1
Splat_355 unknown unknown brain None None unknown None KIZ-AS1, GATA3, ZFPM2-AS1, TRHDE
Splat_356 unknown unknown brain None None unknown None GATA3, SATB1-AS1, CTC-535M15.2
Splat_357 unknown unknown brain None None unknown None EMX2, TFAP2B, LEF1
Splat_358 unknown unknown brain None None unknown None TFAP2B, GATA3, GRIK1, ZFHX3, TAFA1
Splat_359 unknown unknown brain None None unknown None TFAP2B, OTX2-AS1, LEF1
Splat_360 unknown unknown brain None None unknown None OTX2, LEF1, NDST4
Splat_361 unknown unknown brain None None unknown None GATA3, SIX3, TAC1
Splat_362 unknown unknown brain None None unknown None PREX2, PTPRK, FSTL5, LUZP2
Splat_363 unknown unknown brain None None unknown None EBF2, ST8SIA6, NR2F2-AS1
Splat_364 unknown unknown brain None None unknown None TFAP2D, NDST4, CTC-340A15.2
Splat_365 unknown unknown brain None None unknown None HTR2C, ZFHX3, MEIS2, GNAS, CALM1, CNTN1
Splat_366 unknown unknown brain None None unknown None EBF3, KLHL1, DACH1, TCF7L2
Splat_367 unknown unknown brain None None unknown None TAC1, PRLR, TCF7L2
Splat_368 unknown unknown brain None None unknown None EBF3, EBF1, TCF7L2, SNHG14
Splat_369 unknown unknown brain None None unknown None TFAP2B, LHX9, RP4-678D15.1
Splat_370 unknown unknown brain None None unknown None EBF2, LGR5, EBF3, LEF1
Splat_371 unknown unknown brain None None unknown None CPA6, NPSR1, BNC2
Splat_373 unknown unknown brain None None unknown None SHOX2, PDGFD, LHX2, TCF7L2
Splat_374 unknown unknown brain None None unknown None TFAP2B, LMX1A
Splat_375 unknown unknown brain None None unknown None POU4F1, CRNDE, CBLN2
Splat_376 unknown unknown brain None None unknown None ZFHX3, RP11-491F9.1
Splat_377 unknown unknown brain None None unknown None LHX1, DIRAS3, ZIC2
Splat_378 unknown unknown brain None None unknown None ONECUT1, ISL1
Splat_379 unknown unknown brain None None unknown None OTP, SLC6A5, EBF2
Splat_380 unknown unknown brain None None unknown None SLC6A5, EBF3, NXPH2, HTR2C
Splat_381 unknown unknown brain None None unknown None OTP, EBF2, EBF1
Splat_382 unknown unknown brain None None unknown None SST, RSPO3, TCF7L2
Splat_383 unknown unknown brain None None unknown None EBF2, LMX1A, PITX2
Splat_384 unknown unknown brain None None unknown None CDH23, PITX2, LMX1A
Splat_385 unknown unknown brain None None unknown None AR, LMX1A
Splat_386 unknown unknown brain None None unknown None TACR3, HOXB3, NR4A2
Splat_387 unknown unknown brain None None unknown None PAX5, EBF2
Splat_388 unknown unknown brain None None unknown None LINC01798, LAMA1, NPFFR2
Splat_389 unknown unknown brain None None unknown None GATA3, DACH1, FIGN
Splat_390 unknown unknown brain None None unknown None POU6F2, ZIC1, NRXN3, SNHG14
Splat_391 unknown unknown brain None None unknown None PDGFD, ST18, CDH12, CTC-535M15.2, CTC-340A15.2
Splat_392 unknown unknown brain None None unknown None FGF10, LHX6
Splat_393 unknown unknown brain None None unknown None ISL1, SIX3, RNF220
Splat_394 unknown unknown brain None None unknown None LINC01798, LHX9, NPNT
Splat_395 unknown unknown brain None None unknown None SLC6A3
Splat_396 unknown unknown brain None None unknown None LMX1B, GATA3, SEMA3D
Splat_397 unknown unknown brain None None unknown None SLC6A4, TPH2
Splat_398 unknown unknown brain None None unknown None PHOX2B, CRNDE
Splat_399 unknown unknown brain None None unknown None TFAP2B, RNF220, MEIS2
Splat_400 unknown unknown brain None None unknown None LHX8, SLC5A7
Splat_402 unknown unknown brain None None unknown None LMNTD1, SST, LINC02822
Splat_403 unknown unknown brain None None unknown None FRMD7, PCBP3
Splat_409 unknown unknown brain None None unknown None GLP1R, TAC3, ST18
Splat_410 unknown unknown brain None None unknown None AVP
Splat_411 unknown unknown brain None None unknown None PPP1R17, RORB, PDE3A
Splat_412 unknown unknown brain None None unknown None ISL1, LEF1, RP11-964E11.3
Splat_413 unknown unknown brain None None unknown None SIM1, PITX2, CTC-340A15.2
Splat_414 unknown unknown brain None None unknown None OTP, SIM1, RP11-964E11.3
Splat_415 unknown unknown brain None None unknown None PEG10, GNAS
Splat_416 unknown unknown brain None None unknown None HMX3, ISL1, DIRAS3
Splat_417 unknown unknown brain None None unknown None DLK1, OTP, ISL1
Splat_418 unknown unknown brain None None unknown None FEZF1, RP11-964E11.3
Splat_420 unknown unknown brain None None unknown None OTP, ZIC1, CTC-552D5.1
Splat_421 unknown unknown brain None None unknown None ESR1, STK32B
Splat_422 unknown unknown brain None None unknown None TMEM255A, LHX6, PEG10, ADARB2
Splat_423 unknown unknown brain None None unknown None PROX1, SOX6, TSHZ2
Splat_424 unknown unknown brain None None unknown None CYP19A1, LHX6, NR2F2, ZBTB7C
Splat_425 unknown unknown brain None None unknown None ESR1, LHX6, NR2F2-AS1, SATB1-AS1
Splat_428 unknown unknown brain None None unknown None FREM2, STK32B, RP11-649A16.1
Splat_429 unknown unknown brain None None unknown None FREM2, PRDM16, MYO5B
Splat_431 unknown unknown brain None None unknown None PGR, TBX3
Splat_432 unknown unknown brain None None unknown None HDC
Sympathetic Neuron unknown unknown lymph node None None unknown None NCAM1, UCHL1
T Cell unknown unknown lymph node None None unknown None CD3D, CD4
T Cell unknown unknown lymph node None None unknown None CD3D, CD8A
T Cell Zone Reticular Cell unknown unknown lymph node None None unknown None CCL19, CCL21, IL7
T Cytotoxic Cell unknown unknown lymph node None None unknown None CD3D, CD8A, GZMB, GZMK
T Follicular Helper Cell unknown unknown lymph node None None unknown None CD3D, CD4, CXCR5, MAF, PDCD1
T Follicular Regulatory Cell unknown unknown lymph node None None unknown None CD3D, CD4, CXCR5, FOXP3, IL2RA
T Regulatory Cell unknown unknown lymph node None None unknown None FOXP3, IL2RA, CTLA4
T cell unknown unknown Uterus None None unknown None CD69, HMGB2, CD3G, IL7R, CXCR4, CCL5
T follicular helper cell unknown unknown thoracic thymus None None unknown None ALG13, CCNH, DDIT4, EIF4A3, FAM177A1, FLT3LG, FOSB, IL7R, NDUFV2, NR4A2
T helper unknown unknown large intestine None None unknown None CD3, CD4
T helper unknown unknown large intestine None None unknown None CD3, CD8
T killer unknown unknown large intestine None None unknown None CD3, CD8
T killer unknown unknown large intestine None None unknown None CD3, CD4, FOXP3
T reg unknown unknown large intestine None None unknown None CD3, CD4, FOXP3
T reg unknown unknown large intestine None None unknown None CD19, CD79a
T regulatory unknown unknown Blood None None unknown None TRAC, TRBC1, IL7R, TRAT1, LTB, AQP3, FOXP3, TNFRSF25, TIGIT, CCR6, TNFRSF4
T regulatory unknown unknown Bone marrow None None unknown None TRAC, TRBC1, IL7R, TRAT1, LTB, AQP3, FOXP3, TNFRSF25, TIGIT, CCR6, TNFRSF4
TBet low Liver NK cell unknown unknown liver None None unknown None TBX21, eomes
Tcell_1 unknown unknown brain None None unknown None CD2, THEMIS
Th1 cell unknown unknown lymph node None None unknown None CD3D, IL7R, ID2
Th17 cell unknown unknown lymph node None None unknown None CD3D, CCR6, IL7R, ID2
Th17 cell unknown unknown thoracic thymus None None unknown None ANXA1, CARHSP1, CD40LG, IL7R, KLRB1, NOSIP, PLAC8, SORL1, ZBTB16
Th2 cell unknown unknown lymph node None None unknown None CD3D, IL7R, ID2
Thex_372 unknown unknown brain None None unknown None FAM9B, PTH2R, RNF220, TCF7L2
Thex_445 unknown unknown brain None None unknown None MAP3K20, KCNH8, RP11-354K4.2
Thex_446 unknown unknown brain None None unknown None DCDC2C, RP11-354K4.2
Thex_447 unknown unknown brain None None unknown None LINC01695, ST8SIA6, TGFBR2, KCNH8
Thex_448 unknown unknown brain None None unknown None NDRG1, ETV1
Thex_449 unknown unknown brain None None unknown None CASQ2, NTS, EDNRB
Thex_450 unknown unknown brain None None unknown None CASQ2, ADAMTS12, AC092684.1
Thex_451 unknown unknown brain None None unknown None CASQ2, CD226, AC092684.1
Thex_452 unknown unknown brain None None unknown None ITM2A, HPSE2, PVALB
Thex_453 unknown unknown brain None None unknown None CARTPT, RGS16, PNOC
Thex_454 unknown unknown brain None None unknown None TAFA4, AP000331.1
Thex_455 unknown unknown brain None None unknown None LINC01151, FSHR
Thex_456 unknown unknown brain None None unknown None LINC02296, ST8SIA6, BMP6, TCF7L2
Thex_457 unknown unknown brain None None unknown None LINC01036, FAM163A
Thex_458 unknown unknown brain None None unknown None NTS, RGS16, LINC01320
Thex_459 unknown unknown brain None None unknown None SLITRK6, MCUB, RNF220
Thex_460 unknown unknown brain None None unknown None DMRTA1, LINC01239
Tingible Body Macrophage unknown unknown lymph node None None unknown None CD4, CD14, HLA-DRA, ITGAX
Transitional principal-intercalated cell unknown unknown kidney None None unknown None FXYD4, SLC4A9, SLC26A7
ULIT_120 unknown unknown brain None None unknown None GLP2R, LINC01378, TRPC6, SEMA3C
ULIT_121 unknown unknown brain None None unknown None TTC6, LAMP5, ANKRD20A11P, AC011288.2, RP4-809F18.1
ULIT_122 unknown unknown brain None None unknown None LINC01500, LINC00507, PDGFD
ULIT_123 unknown unknown brain None None unknown None LINC02306, LINC02263, PDGFD, RP11-191L9.4
ULIT_124 unknown unknown brain None None unknown None LINC00508, LINC02306, RP11-380P13.1, RP11-335E8.3
ULIT_125 unknown unknown brain None None unknown None LINC02306, LINC01331, CYP1B1-AS1, RP11-335E8.3
ULIT_126 unknown unknown brain None None unknown None RP11-120L14.1, RP11-632B21.2, AJ006998.2
ULIT_127 unknown unknown brain None None unknown None CARM1P1, RP11-120L14.1, AJ006998.2
ULIT_128 unknown unknown brain None None unknown None LAMA2, COL5A2, LINC02055, RP11-387P12.1
ULIT_129 unknown unknown brain None None unknown None LINC00326, LINC02296, CTD-2050E21.1
ULIT_130 unknown unknown brain None None unknown None LINC02296, COL5A2, RP11-370K2.1, RP11-191L9.4
ULIT_131 unknown unknown brain None None unknown None LINC02306, AC067959.1, RP11-191L9.4
ULIT_133 unknown unknown brain None None unknown None RORB, ADAMTS17, POU6F2, TRPC3
ULIT_134 unknown unknown brain None None unknown None VIPR2, RP11-484I6.9, CTB-57H20.1
ULIT_135 unknown unknown brain None None unknown None COL22A1, RP11-197K6.1, CTD-2058B24.2
ULIT_138 unknown unknown brain None None unknown None LINC02306, RP11-404H1.1, RP11-320L2.1
URL_297 unknown unknown brain None None unknown None RBP3
URL_308 unknown unknown brain None None unknown None EOMES, RP11-312A15.5
URL_309 unknown unknown brain None None unknown None ABCA13, RP11-340A13.4
URL_310 unknown unknown brain None None unknown None RELN, RP11-81F8.1, RP11-97F8.2, RP11-649A16.1
URL_311 unknown unknown brain None None unknown None ETV1, RP11-81F8.1, RP11-649A16.1
URL_312 unknown unknown brain None None unknown None TTR, RP11-81F8.1, RP5-1101C3.1
VLMC L1-5 PDGFRA COLEC12 unknown unknown brain None None unknown None COL1A2, COLEC12
VendAC_14 unknown unknown brain None None unknown None SEMA3G, HERC2P3
VendA_18 unknown unknown brain None None unknown None MGP, MECOM
VendC_15 unknown unknown brain None None unknown None HMCN1, ABCG2, MECOM
VendPLVAP_13 unknown unknown brain None None unknown None PLVAP
VendVC_16 unknown unknown brain None None unknown None TRPM6, MECOM
VendV_17 unknown unknown brain None None unknown None IL1R1, SRGN
Ventral Excitatory Neuron 1 unknown unknown spinal cord None None unknown None ZFHX3, POU6F2, ONECUT2
Ventral Excitatory Neuron 2 unknown unknown spinal cord None None unknown None ZFHX3, FOXP2, RNF220
Ventral Excitatory Neuron 3 unknown unknown spinal cord None None unknown None ZFHX3, CDH9, NR4A2
Ventral Inhibitory Neuron 1 unknown unknown spinal cord None None unknown None NFIX, PROX1
Ventral Inhibitory Neuron 2 unknown unknown spinal cord None None unknown None ZFHX3, FOXP2, GATA3
Ventral Inhibitory Neuron 3 unknown unknown spinal cord None None unknown None ZFHX3, ASAH2, GAS1RR
Vsmc_19 unknown unknown brain None None unknown None ACTA2, MECOM
Vsmc_20 unknown unknown brain None None unknown None ACTA2, TAGLN
absorptive unknown unknown large intestine None None unknown None keratin 20, BEST4
absorptive unknown unknown Small Intestine None None unknown None CA2, SI
adipocyte unknown unknown large intestine None None unknown None S100
adult endothelial progenitor cell unknown unknown respiratory system None None unknown None KIT, APLNR
adventitial fibroblast unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, LUM, MFAP5, SCARA5, DCLK1
adventitial fibroblast unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, LUM, MFAP5, PI16, PLA2G2A, SLPI, SCARA5, DCLK1
airway deuterosomal cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, DEUP1, FOXN4, CDC20B, TYMS, FOXJ1
airway deuterosomal cell unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, DEUP1, FOXN4, CDC20B, TYMS, FOXJ1
airway submucosal gland ciliated duct cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, TUBA1A, DYNLRB2, TUBB4B, RSPH1
airway submucosal gland ciliated duct cells unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, TUBA1A, DYNLRB2, TUBB4B, RSPH1
airway submucosal gland collecting duct epithelial cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, PLUNC, MIA, ALDH1A3, RARRES1
airway submucosal gland collecting duct epithelial cell unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, BPIFA1, MIA, ALDH1A3, RARRES1
airway submucosal gland collecting duct epithelial cell unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, PLUNC, MIA, ALDH1A3, RARRES1
airway submucosal gland duct basal cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, FOXC1, KRT14, CTNNB1
airway submucosal gland duct basal cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR, KRT14, CTNNB1
airway submucosal gland duct basal cell unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, FOXC1, KRT14, CTNNB1
airway submucosal gland duct basal cell unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, FOXC1, KRT14, CTNNB1
airway submucosal gland duct ciliated cell unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, DYNLRB2, RSPH1
alveolar macrophage unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, SIGLEC1, MRC1, CD163, FABP4, MARCO, CYP27A1, PPARG
alveolar macrophage CCL3+ unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, SIGLEC1, MRC1, CD163, CCL3, FABP4, MARCO, CYP27A1, PPARG
alveolar macrophage MT-positive unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, SIGLEC1, MRC1, CD163, MT1E, FABP4, MARCO, CYP27A1, PPARG
alveolar macrophage proliferating unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, SIGLEC1, MRC1, CD163, CDK1, FABP4, MARCO, CYP27A1, PPARG
alveolar type 1 fibroblast cell unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, LUM, WNT2, TCF21, FGFR4
alveolar type 1 fibroblast cell unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, LUM, WNT2, TCF21, FGFR4, INMT, CES1, SAA1, VEGFD
alveolar type I cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, SFTA2, SLC39A8, HOPX, AGER, CLIC5, RTKN2, AQP4, SCEL, GRAMD2A
alveolar type II cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, SFTA2, SLC39A8, HOPX, MFSD2A, ABCA3, SFTPA2, LAMP3, BMP1
apocrine unknown unknown large intestine None None unknown None keratin 7, keratin 19
arteriole endothelial cell unknown unknown large intestine None None unknown None CD31, CD34, CD36
arteriole endothelium unknown unknown large intestine None None unknown None CD31, CD34, CD36
basal cell of bronchus unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR
basal cell of epithelium of lobular bronchiole unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR
basal cell of epithelium of respiratory bronchiole unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, SCGB3A2, KLK11, SOX4, SCGB1A1
basal cell of epithelium of terminal bronchiole unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR
basal cell of epithelium of trachea unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR
basal cell of prostatic urethra unknown unknown prostate gland None None unknown None KRT5, S100A2, KRT15
basal epithelial cell of tracheobronchial tree unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5
basal epithelial cell of tracheobronchial tree unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR
basophil unknown unknown Blood None None unknown None HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, IL3RA
basophil unknown unknown Bone marrow None None unknown None HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, IL3RA
basophil unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A
blood endothelial cell unknown unknown thoracic thymus None None unknown None A2M, AQP1, BCAM, IFI27, NPDC1, PLVAP, RAMP2, RNASE1, SPARCL1, TM4SF1
blood vessel smooth muscle cell unknown unknown pulmonary vascular system None None unknown None COL1A2, DCN, MFAP4, PLN, NTRK3, NOTCH3, HEY2
blood vessel smooth muscle cell unknown unknown systemic artery None None unknown None COL1A2, DCN, MFAP4, PLN, NTRK3, NOTCH3, HEY2
blood vessel smooth muscle cell unknown unknown venous blood vessel None None unknown None COL1A2, DCN, MFAP4, PLN, NTRK3, NOTCH3, HEY2
blood vessel smooth muscle cell unknown unknown bronchial artery None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, NOTCH3, HEY2, NTRK3, ITGA7, MYH11
blood vessel smooth muscle cell unknown unknown bronchial vein None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, NOTCH3, HEY2, NTRK3, ITGA7, MYH11
bronchial smooth muscle cell unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, CNN1, MYH11, PLN, LGR6, FAM83D
bronchial smooth muscle cell unknown unknown extrapulmonary bronchus None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, CNN1, MYH11, PLN, LGR6, FAM83D
bronchiolar smooth muscle cell unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, CNN1, TAGLN, PLN, LGR6, MYH11
cDC1 CD141-positive myeloid dendritic cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, CD141, HLA-DRB1, CLEC9A, CADM1, FLT3
cDC2 CD1c-positive myeloid dendritic cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, CD1c, HLA-DRB1, CLEC10A, FCGR2B, SIRPACD172a
capillary endothelial cell unknown unknown prostate gland None None unknown None GJA1, CA4, PECAM1
capillary endothelium unknown unknown large intestine None None unknown None CD31, CD34, CD36
capsule mesenchymal stromal cell unknown unknown kidney None None unknown None Foxd1, VSX2
ciliated cell of terminal ciliated ducts of submucosal glands unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, TUBA1A, DYNLRB2, TUBB4B, RSPH1
ciliated cell of the bronchus unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, RSPH1, DYNLRB2, TUBB4B
ciliated cell of the bronchus unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, RSPH1, DYNLRB2, TUBB4B, DNAH12
ciliated columnar cell of tracheobronchial tree unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, DYNLRB2, TUBB4B, RSPH1
ciliated epithelial cell unknown unknown Uterus None None unknown None EPCAM, PIFO, TPPP3, FOXJ1
classical inflammatory monocyte unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, CD14, S100A9, VCAN, CCR2, FCN1
club cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, SCGB1A1, SCGB3A2, CYP2F1
club cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, SCGB1A1, SCGB3A2, CYP2F2
columnar unknown unknown large intestine None None unknown None keratin 7
common lymphoid progenitor unknown unknown Bone marrow None None unknown None CYGB, ADA, PRDX1, LAT2, UMODL1, CD200
common myeloid progenitor unknown unknown Bone marrow None None unknown None HPGDS, GATA2, CYTL1, SERPINB1, MEST
connective tissue type mast cell unknown unknown respiratory system None None unknown None MS4A2, SLC18A2, RGS13, TPSAB1, CPA3, KIT, CMA1
conventional dendritic cell 1 unknown unknown thoracic thymus None None unknown None BATF3, C1orf54, CLEC9A, CPVL, DNASE1L3, HLA-DPA1, IRF8, LGALS2, LYZ, RGCC
conventional dendritic cell 2 unknown unknown thoracic thymus None None unknown None ALDH2, CD1C, CLEC10A, CTSH, GSN, HLA-DQA1, HAL-DQB1, JAML, LGALS2, MNDA
cortical thymic epithelial cell unknown unknown thoracic thymus None None unknown None CCL25, COX7A1, CTSV, GNG11, PDLIM1, PLTP, PRSS16, PSMB11, S100A14, SCX
corticomedullary thymic epithelial cell unknown unknown thoracic thymus None None unknown None CCL2, CCL25, CTSV, CYR61, HCFC1R1, KRT5, P3H2, PLTP, TDGF1, TFPI2
cytotoxic CD4 T cell unknown unknown thoracic thymus None None unknown None ARID5B, CKLF, CST7, DUSP4, GZMA, GZMK, IL10, PRDM1, RGS1, RNF19A
dendritic cell unknown unknown large intestine None None unknown None HLA-DR, CD11c, CD123
dendritic cell unknown unknown large intestine None None unknown None integrin subunit alpha E/CD103, integrin subunit alpha M/CD11b
dendritic cell type 1 unknown unknown Bone marrow None None unknown None CLEC9A, CADM1, XCR1
dendritic cell type 1 (DC1) unknown unknown Blood None None unknown None CLEC9A, CADM1, XCR1
dendritic cell type 2 unknown unknown Bone marrow None None unknown None CD1C, FCER1A, CLEC10A, HLA-DQA2, HLA-DPB1, FCGR2B
dendritic cell type 2 (DC2) unknown unknown Blood None None unknown None CD1C, FCER1A, CLEC10A, HLA-DQA2, HLA-DPB1, FCGR2B
dendritic cell type 3 unknown unknown Bone marrow None None unknown None CD1C, FCER1A, CLEC10A, S100A8, S100A9, CD36, CD163
dendritic cell type 3 (DC3) unknown unknown Blood None None unknown None CD1C, FCER1A, CLEC10A, S100A8, S100A9, CD36, CD163
double negative thymocyte 2 unknown unknown thoracic thymus None None unknown None BCL11B, CD3E, CD7, CD34, CD44, GATA3, MME, PTCRA, SPI1, TCF7
double negative thymocyte 3 unknown unknown thoracic thymus None None unknown None BCL11B, CD3E, CD7, CD34, GATA3, MME, PTCRA, RAG2, TCF7
double negative thymocyte 4 unknown unknown thoracic thymus None None unknown None BCL11B, CD1A, CD3E, CD7, DNTT, GATA3, MME, PTCRA, RAG2, TCF7
double positive thymocyte unknown unknown thoracic thymus None None unknown None CD1A, CD1B, CD1E, CD8A, CD8B, ELOVL4, SH3TC1, SMPD3, UHRF1
early Megakaryocyte unknown unknown Bone marrow None None unknown None GATA2, FCER1A, PLEK, CAVIN2, PDLIM1
early erythroid unknown unknown Bone marrow None None unknown None MYC, APOC1, PRSS57, KCNH2, EPCAM, CD36, KLF1, GATA1
early thymic progenitor unknown unknown thoracic thymus None None unknown None BCL11B, CD7, CD19, CD34, CD44, CD79B, GATA3, IRF8, MPO, SPI1
eccrine unknown unknown large intestine None None unknown None keratin 7, keratin 19
effector memory CD4-positive, alpha-beta T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, CD3E, CD4
effector memory CD8-positive, alpha-beta T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, CD8A, CD3e, CD3D
endocrine lineage cell unknown unknown Small Intestine None None unknown None CRYBA2
endothelial cell unknown unknown Uterus None None unknown None CD34, SEMA3G, ACKR1
endothelial cell of artery unknown unknown systemic artery None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, DKK2, GJA5, EFNB2, HEY1, SOX17
endothelial cell of artery unknown unknown bronchial artery None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, EFNB2, GJA5, IGFBP3, BMX, DKK2
endothelial cell of artery unknown unknown prostate gland None None unknown None GJA4, IGFBP3, PECAM1
endothelial cell of respiratory system lymphatic vessel unknown unknown respiratory system None None unknown None CLDN5, ECSCR, MMRN1, PROX1, CCL21, LYVE1
endothelial cells unknown unknown Small Intestine None None unknown None NOVA2, SOX17
endovascular extravillous trophoblast unknown unknown placenta None None unknown None HLA-G, KRT7, MCAM, CDH5
enterocyte unknown unknown Small Intestine None None unknown None BEST4, CA7, NEURL1, HES1
eosinophil unknown unknown Blood None None unknown None HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, HPGDS
eosinophil unknown unknown Bone marrow None None unknown None HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, HPGDS
eosinophil unknown unknown large intestine None None unknown None CD11b, CD294
epithelial stem cell unknown unknown large intestine None None unknown None RGMB, SOX9, CD44, Lgr5, LRIG1, SMOC2
erythroid unknown unknown thoracic thymus None None unknown None AHSP, ALAS2, BLVRB, FAM178B, HBA1, HBA2, HBB, HBG1, HBG2, HBM
fibroblast unknown unknown large intestine None None unknown None Col6A1, Col6A2
fibroblast unknown unknown Small Intestine None None unknown None COL6A1, COL6A2
fibroblast of pulmonary artery unknown unknown pulmonary vascular system None None unknown None COL1A2, MMP2
fibroblasts unknown unknown Small Intestine None None unknown None COL6A1, COL6A2
gamma-delta T cell unknown unknown thoracic thymus None None unknown None AES, ANXA1, CCR9, FCGRT, LAT, SELL, SH3BP5, SMPD3, TESPA1, TRDC
ganglion unknown unknown large intestine None None unknown None peripherin, MAP-2
glandular epithelial cell unknown unknown Uterus None None unknown None EPCAM, SCGB2A2, PAEP, CXCL8
glomus cell unknown unknown large intestine None None unknown None actin alpha 2, smooth muscle, dopamine receptor D2
goblet unknown unknown large intestine None None unknown None keratin 20, MUC2
goblet cell unknown unknown Small Intestine None None unknown None MUC2, ITLN1, SLC26A2, CLCA4
goblet cell of epithelium of lobar bronchus unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5AC, SPDEF, MUC5B, TFF2, AGR2
goblet cell of epithelium of lobar bronchus unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5AC, SPDEF, MUC5B, TFF2, AGR2
granulocyte-macrophage progenitor cell unknown unknown Bone marrow None None unknown None CD34, CALR, CLEC11A, MPO, AZU1
group 3 innate lymphoid cell unknown unknown thoracic thymus None None unknown None CD52, IL7R, JAML, KLRB1, KRT86, LST1, LTB, S100A4, TMIGD2, TRDC
hemopoietic stem cell unknown unknown Bone marrow None None unknown None AVP, CRHBP, NPR3, BEX1, PROM1, CD34, HLF, MLLT3
immature B cell unknown unknown Blood None None unknown None CD19, PAX5, IGHM, MS4A1
immature B cell unknown unknown Bone marrow None None unknown None CD19, PAX5, IGHM, MS4A1
immature NKT cell unknown unknown thoracic thymus None None unknown None CCL5, CD8A, CST7, GIMAP4, GZMK, GZMM, NKG7, SAMD3, XCL1
innate lymphoid cell unknown unknown large intestine None None unknown None CD127, CD117, CD161
innate lymphoid cell unknown unknown Uterus None None unknown None CD69, KIT, IL7R, CXCR4, CCL5, SPINK2
interstitial cell of Cajal unknown unknown large intestine None None unknown None CD117, CD34
interstitial extravillous trophoblast unknown unknown placenta None None unknown None HLA-G, KRT7, MCAM, PLAC8
ionocyte epithelia unknown unknown prostate gland None None unknown None FOXI1, ATP6V0A4, DGKI
keratinocyte unknown unknown large intestine None None unknown None keratin 5/6, p60
langerhans unknown unknown large intestine None None unknown None CD1a, langerin
langerhans cells unknown unknown large intestine None None unknown None CD1a, langerin
late erythroid unknown unknown Bone marrow None None unknown None HBB, ALAS2, BPGM, HBA2, HBG1, DCAF12, ADIPOR1
luminal epithelial cell unknown unknown Uterus None None unknown None EPCAM, LGR5, PTGS1
lung ciliated cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, FOXJ1, RSPH1, DYNLRB2, TUBB4B
lung megakaryocyte unknown unknown respiratory system None None unknown None ITGA2B, ITGB3, PF4, GP1BA
lung neuroendocrine cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, ASCL1, GRP, CHGA, CALCA
lung neuroendocrine cell unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, ASCL1, GRP, CALCA, CHGA
lung parenchyma resident eosinophil unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, EPX, EAR11
lung perichondrial fibroblast unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, LUM, COL2A1
lung perichondrial fibroblast unknown unknown extrapulmonary bronchus None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, COL2A1, LUM
lung pericyte unknown unknown respiratory system None None unknown None COL1A2, DCN, LAMC3, HIGD1B, COX4I2, TRPC6, PDGFRB
lymph node lymphatic vessel endothelial cell unknown unknown prostate gland None None unknown None LYVE1, FLT4, PECAM1
lymphatic endothelial cell unknown unknown lymph vasculature None None unknown None FLT4 (VEGFR-3)
lymphatic endothelial cell unknown unknown thoracic thymus None None unknown None CCL21, FABP5, LAPTM5, MMRN1, NTS, NUPR1, PROX1, SDPR, TFF3, TFPI
lymphatic endothelium unknown unknown large intestine None None unknown None CD31, podoplanin
lymphatic endothelium unknown unknown large intestine None None unknown None PDL1, CD56, PGP9.5
lympho-myeloid progenitor cell unknown unknown Bone marrow None None unknown None CD34, BCL11A, IL2RG, JCHAIN, SOX4, SYK
lymphocyte unknown unknown Uterus None None unknown None PTPRC, NCAM1
macrophage unknown unknown large intestine None None unknown None HLA-DR, CD163, CD206, CD11b, CD68
macrophage unknown unknown large intestine None None unknown None CD3, CD4
macrophage unknown unknown Small Intestine None None unknown None CD14
macrophage unknown unknown thoracic thymus None None unknown None APOE, C1QA, C1QB, C1QC, LGMN, MS4A7, RNASE1, SELENOP, SLC40A1, STAB1
macrophage unknown unknown Uterus None None unknown None CD68, CD14, CSF1R, IL1B, SEPP1
mast cell unknown unknown Bone marrow None None unknown None HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, HPGDS, TPSAB1, KIT
mast cell unknown unknown large intestine None None unknown None CD117, MCT
mast cell unknown unknown Small Intestine None None unknown None HDC
mast cell unknown unknown thoracic thymus None None unknown None CPA3, GATA2, HDC, HPGDS, IL1RL1, LMO4, PLIN2, TNFSF10, TPSAB1, TPSB2
mast cell unknown unknown Uterus None None unknown None CD69, MS4A2, KIT, CSF1
mature CD8 T cell unknown unknown Blood None None unknown None CCL5, GZMH, IL32, CD8A, DUSP2, KLRG1, TRGC2, GZMK
mature CD8 T cell unknown unknown Bone marrow None None unknown None CCL5, GZMH, IL32, CD8A, DUSP2, KLRG1, TRGC2, GZMK
mature NK T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, NCAM1, CD3E
mature Natural killer unknown unknown Blood None None unknown None TRDC, KLRB1, CLIC3, CST7, GZMA, GZMB, PRF1, FCGR3A
mature Natural killer unknown unknown Bone marrow None None unknown None TRDC, KLRB1, CLIC3, CST7, GZMA, GZMB, PRF1, FCGR3A
medullary thymic epithelial cell type 1 unknown unknown thoracic thymus None None unknown None CCL19, CH25H, CLU, FN1, KRT5, KRT14, KRT15, KRT19, PTGDS, SAA1
medullary thymic epithelial cell type 2 unknown unknown thoracic thymus None None unknown None CALML3, CCL19, CSTA, FGF17, HLA-DQA1, KRT17, NTHL1, SNCG, TYW3, VIM
medullary thymic epithelial cell type 3 unknown unknown thoracic thymus None None unknown None CALML5, DEFB1, KRT6A, KRT19, LYD, PERP, S100A9, SFN, SLP1, SPINK5
medullary thymic epithelial cell type 4 unknown unknown thoracic thymus None None unknown None ANXA1, ANXA4, BMX, EPCAM, FOXI1, HEPACAM2, KRT8, KRT18, LRMP, RASSF6
megakaryocyte-erythroid-mast cell progenitor unknown unknown Bone marrow None None unknown None CD34, SPINK2, PRSS57, GATA2, TESPA1, IL1B, CTNNBL1, GATA1
melanocyte unknown unknown large intestine None None unknown None S100, melanA, SOX10
memory B cell unknown unknown Blood None None unknown None CD19, MS4A1, IGHA1, IGHG1, CD82, SELL, CD27
memory B cell unknown unknown Bone marrow None None unknown None CD19, MS4A1, IGHA1, IGHG1, CD82, SELL, CD27
memory B cell unknown unknown thoracic thymus None None unknown None ADAM28, BANK1, CRIP1, GPR183, HLA-DQA1, HLA-DRA, IGHA1, LY86, MS4A1, TNFRSF13B
mesothelial cell unknown unknown large intestine None None unknown None keratin 8, keratin 18, calretinin
mesothelial cell of visceral pleura unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, WT1, UPK3B, ITLN1
mid erythroid unknown unknown Bone marrow None None unknown None CD36, KLF1, TSPO2, RHAG, RHCE, SPTA1
migratory dendritic cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, CCR7, CCL19, LAD1
monocyte unknown unknown thoracic thymus None None unknown None CD52, CTSS, FCN1, LYZ, S100A4, S100A6, S100A8, S100A9, S100A12, VCAN
motor neuron unknown unknown spinal cord None None unknown None SNAP25, PRPH
mucosal invariant T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, KLRB1, PRF1, KLRG1
mucus secreting cell of bronchus submucosal gland unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5B, SPDEF, AGR2
mucus secreting cell of bronchus submucosal gland unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5B, SPDEF, AGR2
mucus secreting cell of trachea gland unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5B, SPDEF, AGR2
multipotent progenitor cell unknown unknown Bone marrow None None unknown None CD34, SPINK2, FLT3
muscle unknown unknown large intestine None None unknown None aSMA, smoothelin
myelocyte unknown unknown Bone marrow None None unknown None LCN2, CAMP, LTF, STOM, CEACAM8
myo-medullary thymic epithelial cell unknown unknown thoracic thymus None None unknown None ACTA1, KLHL41, MYLPF, MYOG, NEB, NNAT, TNNI2, TNNT3, TPM2, TTN
myoepithelial unknown unknown large intestine None None unknown None aSMA
myoepithelial cell of bronchus submucosal gland unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, ACTA2, MYH11, KRT14, KRT5, CNN1
myoepithelial cell of bronchus submucosal gland unknown unknown respiratory system None None unknown None CDH1, FXYD3, EPCAM, ELF3, ACTA2, MYH11, KRT14, KRT5, CNN1
myoepithelial cell of bronchus submucosal gland unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, ACTA2, MYH11, KRT14, KRT5, CNN1
myoepithelial cell of trachea gland unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, ACTA2, MYH11, KRT14, KRT5, CNN1
myofibroblast unknown unknown large intestine None None unknown None aSMA
myofibroblast unknown unknown Small Intestine None None unknown None TP53I3, DES, ACTG2, CNN1
naive B cell unknown unknown Blood None None unknown None CD19, PAX5, IGHM, MS4A1, CD40, FCER2
naive B cell unknown unknown Bone marrow None None unknown None CD19, PAX5, IGHM, MS4A1, CD40, FCER2
naive B cell unknown unknown thoracic thymus None None unknown None BIRC3, CD22, CD79A, FCER2, HLA-DQB1, HLA-DRA, IGHD, IGHM, MS4A1, TCL1A
naive thymus-derived CD4-positive, alpha-beta T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, CCR7, LEF1
naive thymus-derived CD8-positive, alpha-beta T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, CD8B, CCR7, MYC, GMNN
natural killer cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, NKG7, KLRD1, TBX21, EOMES, NKp46
natural killer cell unknown unknown thoracic thymus None None unknown None CMC1, GNLY, HOPX, KLRB1, KLRC1, KLRD1, KLRF1, NKG7, TYROBP, XCL2
nerve unknown unknown large intestine None None unknown None PDL1, CD56, PGP9.5
nerve unknown unknown large intestine None None unknown None S100, SOX10, PGP9.5
nerve/schwann cell unknown unknown large intestine None None unknown None S100, CD56, PGP9.5
neuro-medullary thymic epithelial cell unknown unknown thoracic thymus None None unknown None BEX1, CAMK2B, CIB2, CLDN3, HES6, KIF19, MAP1B, NNAT
neuroendocrine unknown unknown large intestine None None unknown None chromogranin A, synaptophysin, INSM1, INSL5
neuroendocrine cell unknown unknown large intestine None None unknown None chromogranin A, synaptophysin, INSM1
neuroendocrine cell of epithelium of lobar bronchus unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, ASCL1, GRP, CHGA, CALCA
neuroendocrine cell of epithelium of lobar bronchus unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, ASCL1, GRP, CHGA, CALCA
neutrophil unknown unknown Blood None None unknown None ITGAM, MMP9, PGLYRP1, ORM1, S100A12, FCN1
neutrophil unknown unknown Bone marrow None None unknown None ITGAM, MMP9, PGLYRP1, ORM1, S100A12, FCN1
neutrophil unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, CSF3R, FCGR3B
neutrophil (normally intravascular only) unknown unknown large intestine None None unknown None CD15, CD16
non-classical or patrolling monocyte unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, MS4A7, CSF1R, RGS18
perichondrial fibroblast unknown unknown trachea None None unknown None COL1A2, DCN, MFAP4, COL6A3, FBLN1, LGR4, LGR6, FLNB, FGFR2
pericryptal fibroblastic sheath unknown unknown large intestine None None unknown None aSMA, WNT2B, RSPO3
pericryptal fibroblastic sheath unknown unknown large intestine None None unknown None aSMA
pericyte unknown unknown large intestine None None unknown None PDGFRB
pericyte unknown unknown large intestine None None unknown None CD31
perineurial cell unknown unknown large intestine None None unknown None CD34
perivascular smooth muscle cell unknown unknown large intestine None None unknown None aSMA
perivascular support cell unknown unknown Uterus None None unknown None ACTA2, MYH11
plasma unknown unknown Small Intestine None None unknown None IGLL5
plasma cell unknown unknown Bone marrow None None unknown None SDC1, DERL3, MZB1, IGKC, SEC11C, IGHG1, IGHA1, TNFRSF17
plasma cell unknown unknown large intestine None None unknown None CD138
plasma cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, MS4A1, BANK1, DERL3, MZB1, SDC1, CD38
plasma cell unknown unknown thoracic thymus None None unknown None DERL3, FKBP11, IGHG1, IGHG3, IGKC, JCHAIN, MZB1, SEC11C, SSR4, XBP1
plasmacytoid dendritic cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, FCER1G, C1orf162, CLEC7A, IL3RA, HLA-DRB1, CLEC4C, NRP1, CXCR3
plasmacytoid dendritic cell unknown unknown thoracic thymus None None unknown None CCDC50, GZMB, IL3RA, IRF7, IRF8, JCHAIN, LILRA4, PLAC8, PLD4, UGCG
precursor B cell unknown unknown Bone marrow None None unknown None CD19, PAX5, IGHM, IGHD
pro B progenitor unknown unknown Bone marrow None None unknown None DNTT, MME, VPREB1, RAG1
promonocyte unknown unknown Bone marrow None None unknown None CX3CR1, CCR2, HLA-DRA, S100A4, S100A6, CST3
promyelocyte unknown unknown Bone marrow None None unknown None MPO, ELANE, CTSG, PRTN3, AZU1
pulmonary artery endothelial cell unknown unknown pulmonary vascular system None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR
pulmonary ionocyte unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, ASCL3, FOXI1, BSND, CLCNKB
pulmonary ionocyte unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, ASCL3, FOXI1, BSND, CLCNKB
regulatory CD4+ T cell unknown unknown large intestine None None unknown None CD4, FOXP3, CD25
regulatory T cell unknown unknown respiratory system None None unknown None CD53, PTPRC, CORO1A, CD3E, IL7R, FOXP3, CTLA4, TNFRSF4, RTKN2, FANK1
regulatory T cells unknown unknown thoracic thymus None None unknown None BATF, CARD16, CTLA4, FOXP3, GBP2, IL32, PIM2, PMAIP1, S100A4, TIGIT
respiratory suprabasal cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR, KRT19, NOTCH3, KRT4
respiratory suprabasal cell unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, TP63, KRT5, NGFR, KRT19, NOTCH3
schwann cell unknown unknown large intestine None None unknown None S100 calcium binding protein A2
sebocyte unknown unknown large intestine None None unknown None keratin 7
secondary crest myofibroblast unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, LTBP2, PDGFRA, ACTA2, C1QTNF7, MYH11
serous cell of epithelium of bronchus unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, PIGR, LYZ, LPO, LTF
serous cell of epithelium of trachea unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, LYZ, PRR4, LPO, LTF
serous secreting cell of bronchus submucosal gland unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, PIGR, LYZ, LPO, LTF
skeletal muscle unknown unknown large intestine None None unknown None DES
smooth muscle unknown unknown large intestine None None unknown None aSMA
smooth muscle cell of the pulmonary artery unknown unknown pulmonary vascular system None None unknown None COL1A2, DCN, MFAP4, PLN, NTRK3, NOTCH3, HEY2
squamous unknown unknown large intestine None None unknown None keratin 5/6, p60
stem cell unknown unknown Small Intestine None None unknown None LGR5, ASCL2, OLFM4, RNF43
stromal cell unknown unknown Uterus None None unknown None IGF1, PCOLCE, MMP11, OGN
subepithelial membrane unknown unknown large intestine None None unknown None aSMA
surface intraepithelial CD4+ lymphocyte unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD4
surface intraepithelial CD4-CD8- lymphocyte alpha/beta unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR
surface intraepithelial CD8+ alph alpha positive alpha/beta lymphocyte unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD8
surface intraepithelial CD8+ alph beta positive alpha/beta lymphocyte unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD8
surface intraepithelial CD8+ alpha alpha positive alpha/beta lymphocyte unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD8
surface intraepithelial CD8+ alpha beta positive alpha/beta lymphocyte unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD8
surface intraepithelial CD8+ lymphocyte gamma/delta unknown unknown large intestine None None unknown None CD3, CD7, CD2, CD5, CD3-TCR, CD8
sympathetic neuron unknown unknown respiratory system None None unknown None TUBB3
thymic capsular fibroblast unknown unknown thoracic thymus None None unknown None C7, DPT, HSPB6, MFAP4, PTGDS, PTN, RBP5, RSPO3, SPARCL1, SRPX
thymic interlobular fibroblast unknown unknown thoracic thymus None None unknown None COL1A1, COL1A2, COL3A1, COL14A1, FBN1, FN1, IGFBP6, LUM, MGP, OGN
tissue resident mucosal type mast cell unknown unknown respiratory system None None unknown None MS4A2, SLC18A2, RGS13, TPSAB1, TPSB2, KIT
tracheal goblet cell unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5AC, SPDEF, MUC5B, TFF2
tracheobronchial chondrocyte unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, COL2A1
tracheobronchial chondrocyte unknown unknown extrapulmonary bronchus None None unknown None COL1A2, DCN, MFAP4, COL2A1
tracheobronchial chondrocyte unknown unknown trachea None None unknown None COL1A2, DCN, MFAP4, COL2A1
tracheobronchial goblet cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, MUC5AC, SPDEF, MUC5B, TFF2, AGR2
tracheobronchial smooth muscle unknown unknown respiratory system None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, CNN1, MYH11, PLN, LGR6, FAM83D
tracheobronchial smooth muscle cell unknown unknown trachea None None unknown None COL1A2, DCN, MFAP4, ACTA2, DES, CNN1, MYH11, PLN, LGR6, FAM83D
transient amplifying cell unknown unknown large intestine None None unknown None keratin 20
transitional unknown unknown large intestine None None unknown None keratin 7, keratin 19
transitional B cell unknown unknown Blood None None unknown None IGLL5, SOX4, BCL7A, TCL1A, FCRLA, CD24
transitional B cell unknown unknown Bone marrow None None unknown None IGLL5, SOX4, BCL7A, TCL1A, FCRLA, CD24
transitional Dendritic Cell unknown unknown Bone marrow None None unknown None AXL, SIGLEC6, CD22
transitional Dendritic Cell (tDC) unknown unknown Blood None None unknown None AXL, SIGLEC6, CD22
tuft cell unknown unknown large intestine None None unknown None keratin 20, DCLK1, TRPM5, POU2F3, PTGS1
tuft cell unknown unknown respiratory system None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, POU2F3, ASCL2, TRPM5, DCLK1
tuft cell unknown unknown extrapulmonary bronchus None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, POU2F3, ASCL2, TRPM5, DCLK1
tuft cell unknown unknown Small Intestine None None unknown None DCLK1, IRF7, SELENBP1
tuft cell unknown unknown trachea None None unknown None CDH1, EPCAM, ELF3, FXYD3, TSPAN1, POU2F3, ASCL2, TRPM5, DCLK1
uterine dendritic cells unknown unknown Uterus None None unknown None IL1B, CD68
uterine macrophage unknown unknown placenta None None unknown None CD68, ITGAX, CD209, MRC1
uterine natural killer cell unknown unknown Uterus None None unknown None CD69, HMGB2, NCAM1, CCL5
uterine smooth muscle type II cell unknown unknown Uterus None None unknown None ACTA2, MYH11, ACTG2
vein endothelial cell unknown unknown prostate gland None None unknown None SELP, CSF3, PECAM1
vein endothelial cell of respiratory system unknown unknown respiratory system None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, ACKR1, PDZRN4, NRF2
vein endothelial cell of respiratory system unknown unknown pulmonary vascular system None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, MMRN1
vein endothelial cell of respiratory system unknown unknown venous blood vessel None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, ACKR1, PLVAP
vein endothelial cell of respiratory system unknown unknown bronchial vein None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, EPHB4, NR2F2, ACKR1
vein endothelial cell of respiratory system unknown unknown bronchial vein None None unknown None CLDN5, NOTCH4, CLEC14A, ECSCR, EFNB4, Nr2F2, ACKR1
venous endothelium unknown unknown large intestine None None unknown None CD31, CD34, CD36
venule endothelium unknown unknown large intestine None None unknown None CD31, CD34, CD36

|}

List of databases relevant to this list

The above dataset provides a nested list of cell groups with over 400 human cell types with cell count, cell size, and aggregate cell mass (biomass). See Dataset S1, Cell Group by Subgroup Tab, in this reference.[21]
Name Provider Sources of revenue/sponsors Scope Amount of cells identified so far
HubMap[22] A series of US based universities Unknown ~1200
Human Cell Atlas Columbia University Medical Center at Columbia University Chan Zuckerberg Initiative 37 trillion cells
A family tree including all the known human cells. However, not all cells are linked to their precursor or progenitor yet.

Cells derived primarily from endoderm

The endodermal cells primarily generate the lining and glands of the digestive tube.[23]

Cells derived primarily from ectoderm

Nervous system

There are nerve cells, also known as neurons, present in the human body. They are branched out. These cells make up nervous tissue. A neuron consists of a cell body with a nucleus and cytoplasm, from which long thin hair-like parts arise.

Central nervous system neurons and glial cells

(large variety of types, still poorly classified)

Cells derived primarily from mesoderm

Note: Cephalic connective tissue and bones are derived from the cranial neural crest which comes from the ectoderm germ layer

See also

References

  1. ^ Hatton IA, Galbraith ED, Merleau NS, Miettinen TP, Smith BM, Shander JA (September 2023). "The human cell count and size distribution". Proceedings of the National Academy of Sciences of the United States of America. 120 (39): e2303077120. Bibcode:2023PNAS..12003077H. doi:10.1073/pnas.2303077120. PMC 10523466. PMID 37722043.
  2. ^ a b "Mapping the human body one cell at a time: New study reveals the intricate relationship between cell size and count". News-Medical.net. 2023-09-19. Retrieved 2023-10-18.
  3. ^ Society, Max Planck. "Cellular cartography: Charting the sizes and abundance of our body's cells reveals mathematical order underlying life". medicalxpress.com. Retrieved 2023-10-18.
  4. ^ a b Sender R, Fuchs S, Milo R (August 2016). "Revised Estimates for the Number of Human and Bacteria Cells in the Body". PLOS Biology. 14 (8): e1002533. doi:10.1371/journal.pbio.1002533. PMC 4991899. PMID 27541692.
  5. ^ Hewings-Martin Y (12 July 2017). "How many cells are in the human body?". Medical News Today. Retrieved 28 June 2023.
  6. ^ Zimmer C (23 October 2013). "How Many Cells Are In Your Body?". National Geographic. Archived from the original on April 3, 2021. Retrieved 29 June 2023.
  7. ^ "The Human Transcript Map". www.ncbi.nlm.nih.gov. Retrieved 2024-04-23.
  8. ^ Amaral, Paulo; Carbonell-Sala, Silvia; De La Vega, Francisco M.; Faial, Tiago; Frankish, Adam; Gingeras, Thomas; Guigo, Roderic; Harrow, Jennifer L.; Hatzigeorgiou, Artemis G. (2023-03-24), "The status of the human gene catalogue", Nature, 622 (7981): 41–47, arXiv:2303.13996, Bibcode:2023Natur.622...41A, doi:10.1038/s41586-023-06490-x, PMC 10575709, PMID 37794265, retrieved 2024-04-23
  9. ^ "Why the human genome was never completed". www.bbc.com. Retrieved 2024-04-23.
  10. ^ "Home". humancellatlas.org. Retrieved 5 May 2023.
  11. ^ "NIH to build a detailed map of cells within the human body". National Institutes of Health (NIH). 26 September 2018. Retrieved 5 May 2023.
  12. ^ Davis D. "The ambitious quest to map every cell in our body". BBC. Retrieved 5 May 2023.
  13. ^ "The HuBMAP Human BioMolecular Atlas Program". HuBMAP Consortium. Retrieved 5 May 2023.
  14. ^ "The Human Protein Atlas". www.proteinatlas.org. Retrieved 19 July 2023.
  15. ^ "Siibra Explorer". atlases.ebrains.eu. Retrieved 2023-07-02.
  16. ^ "Medical Data Analytics". The Human Brain Project. Retrieved 2 July 2023.
  17. ^ "Home". www.humancellatlas.org. Retrieved 2024-04-23.
  18. ^ "Standards". International Society for Stem Cell Research. Retrieved 2024-04-23.
  19. ^ "Brunner Gland - an overview | ScienceDirect Topics". www.sciencedirect.com. Retrieved 2023-12-10.
  20. ^ "CCF ASCT+B Reporter". Hubmap Consortium.
  21. ^ Hatton, Ian A.; Galbraith, Eric D.; Merleau, Nono S. C.; Miettinen, Teemu P.; Smith, Benjamin McDonald; Shander, Jeffery A. (2023-09-26). "The human cell count and size distribution". Proceedings of the National Academy of Sciences. 120 (39). Bibcode:2023PNAS..12003077H. doi:10.1073/pnas.2303077120. ISSN 0027-8424. PMC 10523466. PMID 37722043.
  22. ^ "The Human BioMolecular Atlas Program (HuBMAP)". commonfund.nih.gov. 5 January 2017. Retrieved 2023-07-12.
  23. ^ Gilbert SF (2000). "Endoderm". Developmental Biology (6th ed.). Sunderland (MA): Sinauer Associates. Retrieved 2023-07-02.

External links

Wikimedia Commons has media related to Human cells.
  • Human Cell Tree Map
  • Human Cell Atlas